NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM40581 Query DataSets for GSM40581
Status Public on Feb 03, 2005
Title HEL Mhi-3
Sample type RNA
 
Source name Interleukin-7 expanded murine bone marrow cells
Organism Mus musculus
Extracted molecule total RNA
 
Description Interleukin-7 expanded bone marrow cells from anti-HEL immunoglobulin transgenic mice were sorted by FACS for surface IgM high, IgDneg-low expression. The U74Av1 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'. Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells
 
Submission date Feb 01, 2005
Last update date May 27, 2005
Contact name Lina Tze
E-mail(s) [email protected]
Phone 011-61-2-6125-2031
Organization name John Curtin School of Medical Research
Street address
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platform ID GPL32
Series (1)
GSE2227 The role of basal immunoglobulin signaling in immature B cell development

Data table header descriptions
ID_REF ID of column
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
100001_at 74.3 A 0.621816
100002_at 171.5 A 0.64131
100003_at 484.1 P 0.013092
100004_at 1057.6 P 0.000562
100005_at 2848.4 P 0.000388
100006_at 32.2 A 0.47938
100007_at 2549.5 P 0.000322
100009_r_at 35.6 A 0.64131
100010_at 1678.9 P 0.000219
100011_at 1809.2 P 0.000388
100012_at 35840.9 P 0.000219
100013_at 2095.8 P 0.000219
100014_at 634.3 P 0.001354
100015_at 78 A 0.458816
100016_at 494 P 0.000673
100017_at 488.6 A 0.234557
100018_at 863 A 0.11716
100019_at 66.1 A 0.92617
100020_at 2142.2 P 0.008689
100021_at 79.8 A 0.581931

Total number of rows: 9977

Table truncated, full table size 258 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap