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Sample GSM4086382 Query DataSets for GSM4086382
Status Public on Apr 28, 2020
Title Paeruginosa_PAO1_PA08051_1
Sample type SRA
 
Source name bacterial culture
Organism Pseudomonas aeruginosa PAO1
Characteristics strain: PAO1
genotype/variation: PA0805.1 over-expression
tissue: bacterial culture
Extracted molecule total RNA
Extraction protocol RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description Bacteria were grown on swarm plates, and the swarm fronts were harvested and suspended in RNA-Protect Bacteria Reagent
Data processing Illumina software used for basecalling.
Sequence reads were mapped to the pseudomonas aeruginosa genome using STAR v2.6.
Count data was generated from STAR produced BAM files using HTSeq v0.61p1.
 
Submission date Sep 19, 2019
Last update date Apr 28, 2020
Contact name Shannon Coleman
Organization name University of British Columbia
Street address 2259 Lower Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
 
Platform ID GPL18782
Series (1)
GSE137738 Overexpression of the small RNA PA0805.1 modulates the expression of a large set of genes and proteins, resulting in altered motility, cytotoxicity and tobramycin resistance
Relations
BioSample SAMN12788812
SRA SRX6874330

Supplementary file Size Download File type/resource
GSM4086382_Paeruginosa_PAO1_PA08051_1.count.txt.gz 22.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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