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GEO accession:
Sample GSM410594
Query DataSets for GSM410594
Status
Public on May 30, 2009
Title
P13 neocortex 2
Sample type
RNA
Source name
wild type cortex
Organism
Mus musculus
Characteristics
strain: CD1
tissue: brain
brain region: cortex
developmental stage: P13
Extracted molecule
total RNA
Extraction protocol
Trizol Extraction.
Label
biotin
Label protocol
Affymetrix WT Sense Target Labeling Assay.
Hybridization protocol
Affymetrix WT Sense Target Labeling Assay.
Scan protocol
The scanning and image acquisition was done using Affymetrix GeneChip Operating Software (GCOS) v1.4. The scanner model is GeneChip Scanner 3000 7G.
Description
Expression analysis.
Data processing
Affymetrix Power Tools(Affymetrix); median normalization; PM-GCBG; iterPLIER.
Analysis was limited to core probe sets. Transcript assignments are based on genome build mm8 (NCBI Build 36).
Submission date
May 29, 2009
Last update date
May 29, 2009
Contact name
Sung Wook Chi
E-mail(s)
[email protected]
Organization name
Rockefeller Univ
Street address
1230 York Ave,
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL6096
Series (1)
GSE16338
P13 cortex RNA
Data table header descriptions
ID_REF
VALUE
Probeset signal values from Affymetrix Power Tools, using iterPLIER
Data table
ID_REF
VALUE
6848511
2305.70071
6864895
1622.28486
6766590
10.60435
6914045
24.03255
6963197
1812.20307
6766588
95.7994
6995964
305.41152
6766587
8.12663
6815739
3381.36278
6766586
189.40217
7012346
85.20555
6766585
75.65423
6848505
694.21906
6766584
34.2049
6848504
296.46279
6979576
49.35032
6995960
1953.87647
6766583
61.29518
6963191
82.3092
6979575
182.57243
Total number of rows:
23172
Table truncated, full table size
400 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM410594.CEL.gz
23.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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