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| Status |
Public on Mar 23, 2020 |
| Title |
Badami sepal visble rep1 |
| Sample type |
SRA |
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| Source name |
floral bud
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| Organism |
Prunus armeniaca |
| Characteristics |
tissue: floral bud
Stage: sepal visible
cultivar name: Badami
cultivar number: A1267
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| Growth protocol |
Apricot trees were grown in France. Peach trees were grown in South Carolina, USA
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA from apricot bud tissue were extracted using NuceloSpin RNA XS Isolation kit (Macherey-Nagel, France). Total RNA from peach tissue were extracted using ??? Kit
Library construction was followed the illumina TruSeq RNA Library Prep Kit
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Adaptors and low-quality reads were trimmed by skewer for each library
Trimmed reads were aligned to Prunus persica v1 and Prunus persica v2 by STAR-2.5.3a
Gene counts were quantified by HTSeq-count
Gene counts of Prupe.1G531100 to Prupe.1G531700 (Pp01:43417246...43480648) in the Purnus persica v2 were replaced by ppa018667m, ppb017585m, ppa010758m, ppa011123m, ppa010822m, and ppa010714m in Prunus persica v1
Genome_build: Prunus persica v2 and Prunus persica v1
Supplementary_files_format_and_content: comma-delimited files with gene counts for apricot and peach
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| Submission date |
Oct 11, 2019 |
| Last update date |
Mar 23, 2020 |
| Contact name |
Margaret Staton |
| E-mail(s) |
[email protected], [email protected]
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| Phone |
8645064515
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| Organization name |
University of Tennessee
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| Street address |
2505 EJ Chapman Blvd, 370 PBB
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| City |
Knoxville |
| State/province |
Tennessee |
| ZIP/Postal code |
37996 |
| Country |
USA |
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| Platform ID |
GPL27604 |
| Series (1) |
| GSE138792 |
Abiotic stress response and adaptive phenology in fruit trees |
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| Relations |
| BioSample |
SAMN13020223 |
| SRA |
SRX6983127 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4119414_11-C.txt.gz |
108.3 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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