|
| Status |
Public on Jan 01, 2020 |
| Title |
45d/HVC1 |
| Sample type |
SRA |
| |
|
| Source name |
HVC region/45 days old
|
| Organism |
Taeniopygia guttata |
| Characteristics |
tissue: avian brain region
|
| Extracted molecule |
total RNA |
| Extraction protocol |
HVC tissue was dissected and RNA was isolated with Trizol reagents
Used a NuGEN Ovation RNAseq V1 kit following manufacturer’s instructions
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Illumina Casava1.7 software used for demultiplexing and base calling
Sequenced reads were trimmed for adaptor sequence, and masked for low-quality sequence, then mapped to zrbra finch whole genome
Genome_build: zebra finch genome (3.2.4/taeGut1)
Supplementary_files_format_and_content: read count
|
| |
|
| Submission date |
Nov 15, 2019 |
| Last update date |
Jan 01, 2020 |
| Contact name |
XiaoChing Li |
| E-mail(s) |
[email protected]
|
| Organization name |
LSU School of Medicine
|
| Department |
Neuroscience Center
|
| Street address |
2020 Gravier St.
|
| City |
New Orleans |
| State/province |
LA |
| ZIP/Postal code |
70112 |
| Country |
USA |
| |
|
| Platform ID |
GPL27759 |
| Series (1) |
| GSE140470 |
Transcriptome profiling of the HVC of the young and adult zebra finch brain by RNA-Seq |
|
| Relations |
| BioSample |
SAMN13292553 |
| SRA |
SRX7156867 |
