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Sample GSM418932 Query DataSets for GSM418932
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-110
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 52
histoculture drug response assay: CAPE = 40
histoculture drug response assay: FLOX = 15
histoculture drug response assay: FLIRI = 42
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) [email protected]
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.805803 10.555717
SNP_A-1780618 AB 0.000002 AB -0.115011 10.397124
SNP_A-1780632 AA 0.000000 AA 0.779014 10.963181
SNP_A-1780654 AA 0.000000 AA 0.821382 11.857338
SNP_A-4192495 AB 0.000000 AB -0.146845 11.943376
SNP_A-4192498 AB 0.000000 AB -0.038414 11.626644
SNP_A-1780732 AB 0.000000 AB 0.149659 10.813385
SNP_A-1780848 AB 0.000000 AB 0.009484 10.803558
SNP_A-1780985 AB 0.002197 AB 0.220074 10.557537
SNP_A-1781076 BB 0.000000 BB -0.845432 10.675038
SNP_A-1781249 AA 0.000000 AA 0.644589 12.297713
SNP_A-1781276 AA 0.000000 AA 0.513557 10.846626
SNP_A-1781302 AB 0.000000 AB 0.149615 11.405123
SNP_A-1781510 AA 0.004689 AA 0.743559 11.079906
SNP_A-4192564 BB 0.000000 BB -0.647966 10.587619
SNP_A-1781614 AB 0.000000 AB 0.143297 10.391073
SNP_A-1781764 AA 0.000000 AA 0.838895 12.669852
SNP_A-1781829 AA 0.000000 AA 0.667719 11.616729
SNP_A-1782155 AA 0.000000 AA 0.625494 10.565371
SNP_A-1782305 AB 0.000000 AB 0.209384 11.190646

Total number of rows: 443816

Table truncated, full table size 20945 Kbytes.




Supplementary file Size Download File type/resource
GSM418932_HRCRC-110.CEL.gz 21.9 Mb (ftp)(http) CEL
GSM418932_HRCRC-110.brlmm-p.chp.gz 5.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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