NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM418964 Query DataSets for GSM418964
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-33
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 56
histoculture drug response assay: CAPE = 37
histoculture drug response assay: FLOX = 45
histoculture drug response assay: FLIRI = 55
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) [email protected]
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.785719 10.573269
SNP_A-1780618 AB 0.000000 AB -0.017027 10.143010
SNP_A-1780632 AA 0.000051 AA 0.615472 10.738085
SNP_A-1780654 AA 0.000000 AA 0.864165 11.605647
SNP_A-4192495 AB 0.000000 AB -0.095574 11.889791
SNP_A-4192498 BB 0.000000 BB -0.784188 11.080162
SNP_A-1780732 AB 0.000000 AB 0.102083 10.593020
SNP_A-1780848 AB 0.000000 AB 0.070432 10.824066
SNP_A-1780985 AB 0.000000 AB -0.051396 10.252591
SNP_A-1781076 BB 0.000000 BB -0.811552 10.506865
SNP_A-1781249 AA 0.000000 AA 0.590803 12.271676
SNP_A-1781276 AA 0.000000 AA 0.614932 10.633670
SNP_A-1781302 BB 0.000000 BB -0.796883 10.563234
SNP_A-1781510 AA 0.000242 AA 0.774262 11.353244
SNP_A-4192564 BB 0.000000 BB -0.707539 10.460014
SNP_A-1781614 AA 0.000000 AA 0.832106 10.411840
SNP_A-1781764 AB 0.000000 AB 0.117118 12.363607
SNP_A-1781829 AA 0.000000 AA 0.694487 11.728073
SNP_A-1782155 AA 0.000000 AA 0.697883 10.414587
SNP_A-1782305 AA 0.000000 AA 0.877055 11.309735

Total number of rows: 443816

Table truncated, full table size 20945 Kbytes.




Supplementary file Size Download File type/resource
GSM418964_HRCRC-33.CEL.gz 19.1 Mb (ftp)(http) CEL
GSM418964_HRCRC-33.brlmm-p.chp.gz 5.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap