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Sample GSM419018 Query DataSets for GSM419018
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-91
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 71
histoculture drug response assay: CAPE = 55
histoculture drug response assay: FLOX = 54
histoculture drug response assay: FLIRI = 67
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) [email protected]
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.691778 10.547621
SNP_A-1780618 AB 0.000001 AB 0.039759 10.475506
SNP_A-1780632 AB 0.000029 AB 0.391125 10.450429
SNP_A-1780654 AA 0.000000 AA 0.891477 11.910939
SNP_A-4192495 AB 0.000000 AB -0.271289 11.900159
SNP_A-4192498 AA 0.000000 AA 0.682933 11.745275
SNP_A-1780732 BB 0.000000 BB -0.687023 10.224357
SNP_A-1780848 BB 0.000000 BB -0.647002 10.967568
SNP_A-1780985 AB 0.000336 AB 0.197016 9.967747
SNP_A-1781076 BB 0.000000 BB -0.839869 10.935800
SNP_A-1781249 AA 0.000000 AA 0.597698 12.133243
SNP_A-1781276 AA 0.000000 AA 0.512840 10.588474
SNP_A-1781302 BB 0.000000 BB -0.683744 11.012187
SNP_A-1781510 AA 0.000082 AA 0.785453 11.184470
SNP_A-4192564 BB 0.000000 BB -0.751105 10.992839
SNP_A-1781614 AB 0.000000 AB 0.232760 10.739864
SNP_A-1781764 AB 0.000000 AB 0.087061 12.358871
SNP_A-1781829 AA 0.000000 AA 0.707489 11.670125
SNP_A-1782155 AA 0.000000 AA 0.610644 10.481294
SNP_A-1782305 BB 0.000000 BB -0.652663 11.470790

Total number of rows: 443816

Table truncated, full table size 20944 Kbytes.




Supplementary file Size Download File type/resource
GSM419018_HRCRC-91.CEL.gz 23.2 Mb (ftp)(http) CEL
GSM419018_HRCRC-91.brlmm-p.chp.gz 5.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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