NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM42293 Query DataSets for GSM42293
Status Public on Jul 20, 2005
Title CGEN 10.5 Vs 11.5.txt column 13
Sample type RNA
 
Channel 1
Source name 10.5dpc metanephric mesenchyme
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name 11.5dpc metanephroi
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Sample; 3
File Name; CGEN 10.5 Vs 11.5.txt
Age; 10.5 V 11.5
Array Design; Mouse Compugen 22K oligo
Common Reference (Yes/No, ID); none
Concentration; 100
Data processing/normalization; R: Print tip Lowes+ between arrays (LIMAS+SMA)
Developmental Stage; embryonic
Diseased/Normal; normal
Dye Swap; green/red
Experiment Type; pairwise comparison
Image Analysis Software; Imagene5.5
Labeling Protocol; Amino Allyl Message Amp Ambion
Organ/Organism part; kidney
Organism; Mus musculus
Organization; IMB, UQ
RNA type; aRNA
Sample Source; primary tissue
Sampling Method; microdissection
Sex; pool of both
Strain/Cell-line; CD1
A Lowess curve was fit to the log-intensity versus log-ratio plot. 20.0% of the data was used to calculate the Lowess fit at each point. This curve was used to adjust the control value for each measurement. If the control channel was lower than 10 then 10 was used instead.
CGEN 10.5 Vs 11.5.txt column 13
 
Submission date Feb 16, 2005
Last update date Jul 20, 2005
Contact name Darrin F Taylor
E-mail(s) [email protected]
Phone +61 7 3346 2607
Organization name Institute for Molecular Bioscience, Uni of Qld
Department Genomics and Bioinformatics
Lab Expression Genomics Lab
Street address Research Rd
City St Lucia
State/province Qld
ZIP/Postal code 4072
Country Australia
 
Platform ID GPL1873
Series (1)
GSE2284 10.5dpc Metanephric mesenchyme Vs 11.5dpc metanephroi

Data table header descriptions
ID_REF ID_REF
Raw Value Type: float; Scale: linear_scale
Control Value Type: float; Scale: linear_scale
VALUE log ratio (log2 of PRE_VALUE)
Flags Type: AbsoluteCallTypeEnum; Scale: unscaled
PRE_VALUE Normalized Value Type: float; Scale: log_base_e

Data table
ID_REF Raw Value Control Value VALUE Flags PRE_VALUE
CS:02:CGEN_MOUSE_3000002_1 6.479 6.244 0.0538063 Present 1.038
CS:03:CGEN_MOUSE_3000003_1 226.4 172.6 0.3906683 Present 1.311
CS:04:CGEN_MOUSE_3000004_1 38.28 141.7 -1.8889693 Present 0.27
CS:05:CGEN_MOUSE_3000005_1 Undef Undef Undef
CS:06:CGEN_MOUSE_3000006_1 1.007 1.025 -0.0247373 Present 0.983
CS:07:CGEN_MOUSE_3000007_1 1.146 939.6 0.2856983 Present 1.219
CS:08:CGEN_MOUSE_3000008_1 1.075 1.633 -0.6038413 Present 0.658
CS:09:CGEN_MOUSE_3000009_1 63.55 150.5 -1.2446853 Present 0.422
CS:10:CGEN_MOUSE_3000010_1 30.51 105.6 -1.7908593 Present 0.289
CS:11:CGEN_MOUSE_3000011_1 Undef Undef Undef
CS:12:CGEN_MOUSE_3000012_1 1.699 1.575 0.1096953 Present 1.079
CS:13:CGEN_MOUSE_3000013_1 2.641 3.221 -0.2863043 Present 0.82
CS:14:CGEN_MOUSE_3000014_1 41.975 31.370 0.4200783 Present 1.338
CS:15:CGEN_MOUSE_3000015_1 21.118 28.092 -0.4111953 Present 0.752
CS:16:CGEN_MOUSE_3000016_1 198.8 241.5 -0.2810363 Present 0.823
CS:17:CGEN_MOUSE_3000017_1 1.016 1.047 -0.0424573 Present 0.971
CS:18:CGEN_MOUSE_3000018_1 1.520 1.551 -0.0291463 Present 0.98
CS:19:CGEN_MOUSE_3000019_1 1.600 1.568 0.0285693 Present 1.02
CS:20:CGEN_MOUSE_3000020_1 972.2 1.988 -1.0320943 Present 0.489
CS:21:CGEN_MOUSE_3000021_1 203.4 432.8 -1.0892673 Present 0.47

Total number of rows: 22702

Table truncated, full table size 1489 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap