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GEO accession:
Sample GSM432833
Query DataSets for GSM432833
Status
Public on Dec 01, 2024
Title
G85SGSC
Sample type
RNA
Source name
yeast cell culture
Organism
Saccharomyces cerevisiae
Characteristics
genotype/variation: wild-type
growth time: 6 hrs
nutrient composition: SG
growth medium: agar
Treatment protocol
quick-frozen in acid phenol
Growth protocol
6 hour growth
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy mini-kit
Label
biotin
Label protocol
Affymetrix IVT labeling
Hybridization protocol
Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
Scan protocol
Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
Description
wild-type, SG agar C
Data processing
Raw CEL intensity data were RMA normalized using R/Bioconductor
Submission date
Jul 23, 2009
Last update date
Dec 01, 2024
Contact name
Gregory Carter
E-mail(s)
[email protected]
Phone
1-207-288-6025
Organization name
The Jackson Laboratory
Street address
600 Main Street
City
Bar Harbor
State/province
ME
ZIP/Postal code
04609
Country
USA
Platform ID
GPL2529
Series (1)
GSE17295
Yeast Thigmotropism Controlled by a Cell-Surface Mucin and a MAP-Kinase Pathway
Data table header descriptions
ID_REF
VALUE
normalized log2 signal
Data table
ID_REF
VALUE
1769308_at
11.5889150459941
1769309_at
5.42722029755984
1769310_at
5.80927080206022
1769311_at
12.3799795752497
1769312_at
9.9907495103874
1769313_at
9.71663501006524
1769314_at
12.3841619623532
1769315_at
4.22329141830608
1769316_s_at
4.43430174525974
1769317_at
8.67154718577215
1769318_at
4.50614113794779
1769319_at
12.2774496234250
1769320_at
10.3165632580297
1769321_at
5.05000636719717
1769322_s_at
6.6317354919834
1769323_at
10.4385014633689
1769324_at
9.2505997860044
1769325_at
8.46802949263041
1769326_at
4.91984615866579
1769327_at
4.30737181982973
Total number of rows:
10928
Table truncated, full table size
300 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM432833.CEL.gz
1.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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