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Sample GSM432836 Query DataSets for GSM432836
Status Public on Dec 01, 2024
Title G2300LC
Sample type RNA
 
Source name yeast cell culture
Organism Saccharomyces cerevisiae
Characteristics genotype/variation: flo11 knockout
growth time: 6 hrs
nutrient composition: SD
growth medium: liquid
Treatment protocol quick-frozen in acid phenol
Growth protocol 6 hour growth
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy mini-kit
Label biotin
Label protocol Affymetrix IVT labeling
 
Hybridization protocol Following fragmentation, ten micrograms of adjusted cRNA fromeach sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
Scan protocol Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
Description flo11 knockout, SD liquid C
Data processing Raw CEL intensity data were RMA normalized using R/Bioconductor
 
Submission date Jul 23, 2009
Last update date Dec 01, 2024
Contact name Gregory Carter
E-mail(s) [email protected]
Phone 1-207-288-6025
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL2529
Series (1)
GSE17295 Yeast Thigmotropism Controlled by a Cell-Surface Mucin and a MAP-Kinase Pathway

Data table header descriptions
ID_REF
VALUE normalized log2 signal

Data table
ID_REF VALUE
1769308_at 10.0141385786369
1769309_at 5.44490932126207
1769310_at 6.09762257726695
1769311_at 12.7215820743231
1769312_at 10.4010062227157
1769313_at 10.2435542759798
1769314_at 12.4874496157984
1769315_at 4.01736907853276
1769316_s_at 4.43691539211439
1769317_at 9.95149290019314
1769318_at 5.08961130053037
1769319_at 12.1448099611332
1769320_at 10.1319443541804
1769321_at 4.65796556925654
1769322_s_at 8.296146044356
1769323_at 10.7469827867435
1769324_at 8.97758013596215
1769325_at 8.14868635308386
1769326_at 5.30458709756871
1769327_at 4.76035116509986

Total number of rows: 10928

Table truncated, full table size 300 Kbytes.




Supplementary file Size Download File type/resource
GSM432836.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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