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Sample GSM433013 Query DataSets for GSM433013
Status Public on Mar 26, 2010
Title Patient_45
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 45
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: -0.181427505355961
proliferation index: -12.4602631319388
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 9.627351484
AFFX-BioB-M_at 9.847683788
AFFX-BioB-3_at 8.453270634
AFFX-BioC-5_at 10.61774294
AFFX-BioC-3_at 11.00119705
AFFX-BioDn-5_at 11.72101372
AFFX-BioDn-3_at 13.08276445
AFFX-CreX-5_at 14.62444707
AFFX-CreX-3_at 14.65494364
AFFX-DapX-5_at 6.549977143
AFFX-DapX-M_at 5.022367813
AFFX-DapX-3_at 4.169925001
AFFX-LysX-5_at 6.209453366
AFFX-LysX-M_at 5.649615459
AFFX-LysX-3_at 5.06608919
AFFX-PheX-5_at 4.209453366
AFFX-PheX-M_at 3.153805336
AFFX-PheX-3_at 4.791814071
AFFX-ThrX-5_at 6.263034406
AFFX-ThrX-M_at 6.821455119

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM433013.cel.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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