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Sample GSM433017 Query DataSets for GSM433017
Status Public on Mar 26, 2010
Title Patient_49
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 49
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: 0.0361880743633876
proliferation index: -1.64122652405072
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 9.753718178
AFFX-BioB-M_at 10.09566075
AFFX-BioB-3_at 9.25313837
AFFX-BioC-5_at 10.76934199
AFFX-BioC-3_at 11.18741394
AFFX-BioDn-5_at 11.77980142
AFFX-BioDn-3_at 13.40333164
AFFX-CreX-5_at 14.50426658
AFFX-CreX-3_at 14.69055459
AFFX-DapX-5_at 6.307428525
AFFX-DapX-M_at 6.292781749
AFFX-DapX-3_at 6.026800059
AFFX-LysX-5_at 6.301953395
AFFX-LysX-M_at 4.419538892
AFFX-LysX-3_at 5.28169825
AFFX-PheX-5_at 4.314696526
AFFX-PheX-M_at 2.655351829
AFFX-PheX-3_at 5.578938713
AFFX-ThrX-5_at 6.409390936
AFFX-ThrX-M_at 4.760220946

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM433017.cel.gz 5.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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