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Sample GSM433019 Query DataSets for GSM433019
Status Public on Mar 26, 2010
Title Patient_51
Sample type RNA
 
Source name CD138 selected plasma cells
Organism Homo sapiens
Characteristics patient: 51
disease state: multiple myeloma
cell type: CD138+ selected plasma cells
risk score: -0.381646013610684
proliferation index: -2.43834473226913
Extracted molecule total RNA
Extraction protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described in PMID: 17105813
Label biotin
Label protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105813
 
Hybridization protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105814
Scan protocol mRNA purification, cDNA synthesis, cRNA preparation, and hybridization to the Human Genome U133Plus 2.0 GeneChip microarrays (Affymetrix, Santa Clara, CA) were performed as previously described PMID: 17105815
Description Gene expression data from CD138+ selected plasma cells
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jul 24, 2009
Last update date Mar 26, 2010
Contact name Yiming Zhou
E-mail(s) [email protected]
Phone (501)296-1503 1413
Organization name Myeloma Institute for Research and Therapy
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL570
Series (1)
GSE17306 Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 10.12425058
AFFX-BioB-M_at 10.70355756
AFFX-BioB-3_at 9.866197085
AFFX-BioC-5_at 11.4427362
AFFX-BioC-3_at 11.74104558
AFFX-BioDn-5_at 12.49162766
AFFX-BioDn-3_at 13.08402771
AFFX-CreX-5_at 14.5504041
AFFX-CreX-3_at 15.03249349
AFFX-DapX-5_at 6.459431619
AFFX-DapX-M_at 4.247927513
AFFX-DapX-3_at 4.465974465
AFFX-LysX-5_at 5.587964989
AFFX-LysX-M_at 5.578938713
AFFX-LysX-3_at 6.316507819
AFFX-PheX-5_at 3.733354341
AFFX-PheX-M_at 3.137503524
AFFX-PheX-3_at 7.034523875
AFFX-ThrX-5_at 5.350497247
AFFX-ThrX-M_at 3.485426827

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM433019.cel.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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