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Sample GSM440057 Query DataSets for GSM440057
Status Public on Mar 08, 2010
Title Cercocebus atys uninfected LN-FRs-replicate-1
Sample type RNA
 
Source name Lymph node snap-fronzen in liquid nitrogen
Organism Cercocebus atys
Characteristics tissue: Lmyph node
siv infection: uninfected
siv type: N/A
Extracted molecule total RNA
Extraction protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
Label biotin
Label protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
 
Hybridization protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
Scan protocol standard Affymetrix protocol
Description FRs
Data processing Cel. files were uploaded into the Expressionist program (Genedata, Pro version 5.1) and the expression level for each of the 47,000 transcripts in the arrays were analyzed using the RMA algorithm
 
Submission date Aug 13, 2009
Last update date Mar 08, 2010
Contact name qingsheng li
E-mail(s) [email protected]
Phone 612-624-9130
Fax 612-626-0623
Organization name University of Minnesota
Department Microbiology
Lab Ashley T. Haase
Street address Box 196, 420 Delaware ST SE
City minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL3535
Series (1)
GSE17626 Lymphatic Tissues of Sooty Mangabeys and Rhesus Macaques in Early SIV Infection

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
NC-006150.CDS92.S1_at 13.99
NC-006150.CDS84.S1_at 31.77
NC-006150.CDS76.S1_at 28.95
NC-006150.CDS68.S1_at 106.2
NC-006150.CDS6.S1_at 13.13
NC-006150.CDS52.S1_at 15.42
NC-006150.CDS44.S1_at 26.22
NC-006150.CDS36.S1_at 66.28
NC-006150.CDS28.S1_at 27.25
NC-006150.CDS222.S1_at 147.3
NC-006150.CDS213.S1_at 36
NC-006150.CDS21.S1_at 11.23
NC-006150.CDS204.S1_at 26.66
NC-006150.CDS196.S1_at 85.17
NC-006150.CDS188.S1_at 86.84
NC-006150.CDS180.S1_at 112.1
NC-006150.CDS172.S1_at 21.51
NC-006150.CDS164.S1_at 43.58
NC-006150.CDS156.S1_at 36.51
NC-006150.CDS148.S1_at 33.45

Total number of rows: 52149

Table truncated, full table size 1392 Kbytes.




Supplementary file Size Download File type/resource
GSM440057.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table
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