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Sample GSM440084 Query DataSets for GSM440084
Status Public on Mar 08, 2010
Title Macaca mulatta 14 dpi SIVmac239 LN-R98032-replicate-2
Sample type RNA
 
Source name Lymph node snap-fronzen in liquid nitrogen
Organism Macaca mulatta
Characteristics tissue: Lmyph node
siv infection: 14 dpi
siv type: SIVmac239
Extracted molecule total RNA
Extraction protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
Label biotin
Label protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
 
Hybridization protocol Li et al., The Journal of infectious diseases 2004, 189, 572-582; Li et al., J Immunol 2009, 2009, 183: 1975–1982
Scan protocol standard Affymetrix protocol
Description R98032
Data processing Cel. files were uploaded into the Expressionist program (Genedata, Pro version 5.1) and the expression level for each of the 47,000 transcripts in the arrays were analyzed using the RMA algorithm
 
Submission date Aug 13, 2009
Last update date Mar 08, 2010
Contact name qingsheng li
E-mail(s) [email protected]
Phone 612-624-9130
Fax 612-626-0623
Organization name University of Minnesota
Department Microbiology
Lab Ashley T. Haase
Street address Box 196, 420 Delaware ST SE
City minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL3535
Series (1)
GSE17626 Lymphatic Tissues of Sooty Mangabeys and Rhesus Macaques in Early SIV Infection

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
NC-006150.CDS92.S1_at 11.89
NC-006150.CDS84.S1_at 34
NC-006150.CDS76.S1_at 21.62
NC-006150.CDS68.S1_at 141.4
NC-006150.CDS6.S1_at 8.023
NC-006150.CDS52.S1_at 11.59
NC-006150.CDS44.S1_at 34.9
NC-006150.CDS36.S1_at 63.39
NC-006150.CDS28.S1_at 19.21
NC-006150.CDS222.S1_at 172
NC-006150.CDS213.S1_at 37.62
NC-006150.CDS21.S1_at 8.669
NC-006150.CDS204.S1_at 18.29
NC-006150.CDS196.S1_at 91.76
NC-006150.CDS188.S1_at 97.35
NC-006150.CDS180.S1_at 94.6
NC-006150.CDS172.S1_at 21.34
NC-006150.CDS164.S1_at 38.1
NC-006150.CDS156.S1_at 34.23
NC-006150.CDS148.S1_at 25.29

Total number of rows: 52149

Table truncated, full table size 1390 Kbytes.




Supplementary file Size Download File type/resource
GSM440084.CEL.gz 8.6 Mb (ftp)(http) CEL
Processed data included within Sample table
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