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Sample GSM442027 Query DataSets for GSM442027
Status Public on Aug 20, 2009
Title A549 lung adenocarcinoma cell line, untreated, experiment #2
Sample type RNA
 
Source name Human A549 lung adenocarcinoma cell line, obtained from the American type Culture Collection (Manassas, VA).
Organism Homo sapiens
Characteristics cell line: A549
Treatment protocol Cells were serum-starved for 24 h and then treated with 5 ng/mL porcine transforming growth factor beta 1 (TGF-beta, R&D Systems, Minneapolis, MN) for indicated times.
Growth protocol A549 cells were maintained in RPMI-1640 medium with glutamine, supplemented with 10% FBS, penicillin, and streptomycin and tested for mycoplasma contamination. All tissue culture media and media supplements were purchased from Life Technologies (Gaithersburg, MD).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the harvested cells using Trizol (Invitrogen) and cleanup performed with an RNeasy kit (Qiagen)
Label biotin
Label protocol Biotinylated cRNA was prepare from 3-5 ug total RNA using standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description A549 lung adenocarcinoma cell line, untreated, experiment #2
Data processing Ann Arbor quantile-normalized trimmed-mean method (PMID: 15705192).
 
Submission date Aug 18, 2009
Last update date Aug 20, 2009
Contact name Rork Kuick
E-mail(s) [email protected]
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
 
Platform ID GPL570
Series (1)
GSE17708 Time Course of TGF-beta treatment of A549 lung adenocarcinoma cell line

Data table header descriptions
ID_REF
VALUE quantile-normalized trimmed-mean, log-transformed with log (max(x+50,0) + 50) using base 10 logarithms

Data table
ID_REF VALUE
1007_s_at 3.775464809
1053_at 2.849419414
117_at 2.315970345
121_at 3.200850498
1255_g_at 2.117271296
1294_at 2.69019608
1316_at 2.444044796
1320_at 2.281033367
1405_i_at 2.130333768
1431_at 2.238046103
1438_at 2.450249108
1487_at 3.693199145
1494_f_at 2.673020907
1552256_a_at 3.666892211
1552257_a_at 3.252367514
1552258_at 2.549003262
1552261_at 2.545307116
1552263_at 2.540329475
1552264_a_at 2.936010796
1552266_at 2.193124598

Total number of rows: 54675

Table truncated, full table size 1210 Kbytes.




Supplementary file Size Download File type/resource
GSM442027_Venkat_017.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data are available on Series record

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