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GEO accession:
Sample GSM442454
Query DataSets for GSM442454
Status
Public on Oct 09, 2009
Title
Lps, 4_hours, rep2
Sample type
RNA
Source name
Lps, 4_hours
Organism
Mus musculus
Characteristics
cell type: primary bone marrow dendritic cell
Treatment protocol
NA
Growth protocol
mouse primary BMDCs (Amit et al. 2009)
Extracted molecule
total RNA
Extraction protocol
miRNEASY (QIAGEN) as recommended by manufactor
Label
Biotin
Label protocol
Standard Affymetrix protocols for mouse ht arrays
Hybridization protocol
Standard Affymetrix protocols for mouse ht arrays
Scan protocol
Standard Affymetrix protocols for mouse ht arrays
Description
5500144052237031609409.B04
Data processing
RMA - All values lower than 20 were replaced by 20. All probesets whose values in all samples are equal or below 20 were removed.
Submission date
Aug 19, 2009
Last update date
Oct 09, 2009
Contact name
Tal Shay
Organization name
Broad Institute
Street address
7CC
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platform ID
GPL8759
Series (1)
GSE17721
Dendritic cell stimulation: 5 ligands, 9 time points
Data table header descriptions
ID_REF
VALUE
RMA normalized intensity for probe set
Data table
ID_REF
VALUE
1415670_at
254.8
1415671_at
1263.6
1415672_at
1016.8
1415673_at
43.5
1415674_a_at
423.9
1415675_at
239.4
1415676_a_at
1304.5
1415677_at
171.3
1415678_at
472.5
1415679_at
951.8
1415680_at
243.7
1415681_at
253.8
1415682_at
32.7
1415683_at
1357.1
1415684_at
100.2
1415685_at
58.2
1415686_at
197.9
1415687_a_at
7417.5
1415688_at
382.1
1415689_s_at
98.2
Total number of rows:
18858
Table truncated, full table size
300 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM442454.CEL.gz
2.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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