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Sample GSM45213 Query DataSets for GSM45213
Status Public on May 15, 2005
Title treatment=AP time=24 (hrs) AP1-24hr
Sample type RNA
 
Source name Human polymorphonuclear (PMN) leukocytes
Organism Homo sapiens
Extracted molecule total RNA
 
Description Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals. "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 24
Sample_descripton: Affymetrix MAS version = MAS5
Sample_descripton: GeneSpring (version 6.0)normalization protocol:
Sample_descripton: 1. Data Transformation: Set measurements less than 0.0 to 0.0
Sample_descripton: 2. Per Chip: Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3. Per Gene: Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM
 
Submission date Mar 14, 2005
Last update date May 29, 2005
Contact name Frank R. DeLeo
E-mail(s) [email protected]
Phone 406-363-9448
Fax 406-363-9394
Organization name National Institute of Allergy and Infectious Diseases
Department Laboratory of Human Bacterial Pathogenesis
Lab Rocky Mountain Laboratories
Street address 903 South 4th Street
City Hamilton
State/province MT
ZIP/Postal code 59840
Country USA
 
Platform ID GPL96
Series (1)
GSE2405 NIH/NIAID Neutrophil Response to A. phagocytophilum

Data table header descriptions
ID_REF probeset
VALUE "signal" a measure of the abundance of a transcript from MAS5
ABS_CALL the call in an absolute analysis (MAS5) that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
RAW normalized value computed using GeneSpring version 6.0 software

Data table
ID_REF VALUE ABS_CALL RAW
1007_s_at 0.735 A 172
1053_at 3.13 M 33.8
117_at 0.96 P 165.1
121_at 0.654 P 509.9
1255_g_at 0.44 A 25.1
1294_at 0.97 P 126.3
1316_at 0.64 P 95.8
1320_at 0.455 A 8.6
1405_i_at 1.531 P 243
1431_at 0.597 A 29.6
1438_at 0.414 A 12
1487_at 1.201 A 216.8
1494_f_at 0.764 P 125.3
1598_g_at 0.398 A 177.8
160020_at 1.157 P 396
1729_at 1.634 P 376.7
1773_at 2.623 A 40.4
177_at 1.243 P 69
179_at 0.891 P 323.3
1861_at 1.772 M 53.7

Total number of rows: 22281

Table truncated, full table size 517 Kbytes.




Supplementary data files not provided
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