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Sample GSM45233 Query DataSets for GSM45233
Status Public on May 15, 2005
Title treatment=AP time=9 (hrs) AP5-9hr
Sample type RNA
 
Source name Human polymorphonuclear (PMN) leukocytes
Organism Homo sapiens
Extracted molecule total RNA
 
Description Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals. "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = AP
Sample_descripton: Sample_time = 9
Sample_descripton: Affymetrix MAS version = GCOS1.2
Sample_descripton: GeneSpring (version 7.0)normalization protocol:
Sample_descripton: 1. Data Transformation: Set measurements less than 0.0 to 0.0
Sample_descripton: 2. Per Chip: Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3. Per Gene: Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM
 
Submission date Mar 14, 2005
Last update date May 29, 2005
Contact name Frank R. DeLeo
E-mail(s) [email protected]
Phone 406-363-9448
Fax 406-363-9394
Organization name National Institute of Allergy and Infectious Diseases
Department Laboratory of Human Bacterial Pathogenesis
Lab Rocky Mountain Laboratories
Street address 903 South 4th Street
City Hamilton
State/province MT
ZIP/Postal code 59840
Country USA
 
Platform ID GPL96
Series (1)
GSE2405 NIH/NIAID Neutrophil Response to A. phagocytophilum

Data table header descriptions
ID_REF probeset
RAW "signal" a measure of the abundance of a transcript from MAS5
ABS_CALL the call in an absolute analysis (MAS5) that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
VALUE normalized value computed using GeneSpring version 6.0 software

Data table
ID_REF RAW ABS_CALL VALUE
1007_s_at 84.1 P 1.0460199
1053_at 4 A 0.20356232
117_at 162.4 P 0.8785501
121_at 149.4 P 1.0357019
1255_g_at 7.4 A 0.65486723
1294_at 34.5 A 0.6831683
1316_at 36.8 P 1.0454545
1320_at 11.5 A 2.7058823
1405_i_at 169 P 1.0193003
1431_at 6.5 A 0.8227848
1438_at 24.8 A 3.7575755
1487_at 99.1 M 1.0127746
1494_f_at 45.9 A 0.75993377
1598_g_at 76.4 A 1.3438874
160020_at 94.9 P 0.82128954
1729_at 115.7 P 1.3314154
1773_at 10.6 A 0.5023697
177_at 74.7 P 2.334375
179_at 237.4 P 1.194165
1861_at 7.8 A 0.29489604

Total number of rows: 22215

Table truncated, full table size 598 Kbytes.




Supplementary data files not provided

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