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Sample GSM45248 Query DataSets for GSM45248
Status Public on May 15, 2005
Title treatment=hklys time=24 (hrs) hklys1-24hr
Sample type RNA
 
Source name Human polymorphonuclear (PMN) leukocytes
Organism Homo sapiens
Extracted molecule total RNA
 
Description Polymorphonuclear (PMN) leukocytes were obtained from healthy individuals. "time" indicates time at which transcript levels were analyzed (hours). "treatment" indicates whether the polymorphonuclear leukocytes were untreated (ctrl) or treated with Anaplasma phagocytophilum (AP), Staphylococcus aureus (SA), HL60 cell lysate (uninf), heat-killed Anaplasma phagocytophilum (hkAP), or heat-killed HL60 cell lysate (hklys).
Sample_descripton: Sample_PMN_treatment = hklys
Sample_descripton: Sample_time = 24
Sample_descripton: Affymetrix MAS version = GCOS1.2
Sample_descripton: GeneSpring (version 7.0)normalization protocol:
Sample_descripton: 1. Data Transformation: Set measurements less than 0.0 to 0.0
Sample_descripton: 2. Per Chip: Normalize to a constant value of 150.0 (MAS scaling factor)
Sample_descripton: 3. Per Gene: Normalize to median
Keywords = NEUTROPHIL RESPONSE TO ANAPLASMA PHAGOCYTOPHILUM
 
Submission date Mar 14, 2005
Last update date May 29, 2005
Contact name Frank R. DeLeo
E-mail(s) [email protected]
Phone 406-363-9448
Fax 406-363-9394
Organization name National Institute of Allergy and Infectious Diseases
Department Laboratory of Human Bacterial Pathogenesis
Lab Rocky Mountain Laboratories
Street address 903 South 4th Street
City Hamilton
State/province MT
ZIP/Postal code 59840
Country USA
 
Platform ID GPL96
Series (1)
GSE2405 NIH/NIAID Neutrophil Response to A. phagocytophilum

Data table header descriptions
ID_REF probeset
RAW "signal" a measure of the abundance of a transcript from MAS5
ABS_CALL the call in an absolute analysis (MAS5) that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
VALUE normalized value computed using GeneSpring version 6.0 software

Data table
ID_REF RAW ABS_CALL VALUE
1007_s_at 48.6 P 0.6044776
1053_at 13.4 A 0.68193376
117_at 185 P 1.0008115
121_at 103.8 P 0.71958405
1255_g_at 3.2 A 0.28318584
1294_at 41.6 A 0.8237623
1316_at 28.3 P 0.80397725
1320_at 1.2 A 0.28235295
1405_i_at 106.4 P 0.64173704
1431_at 1.7 A 0.21518987
1438_at 3.5 A 0.530303
1487_at 65.7 P 0.6714359
1494_f_at 55.5 P 0.9188741
1598_g_at 73.8 A 1.2981532
160020_at 57.5 P 0.4976201
1729_at 60.7 P 0.6985041
1773_at 10.1 A 0.47867304
177_at 17.8 P 0.55625
179_at 159 P 0.79979885
1861_at 13.4 A 0.50661623

Total number of rows: 22215

Table truncated, full table size 600 Kbytes.




Supplementary data files not provided

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