 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 06, 2022 |
| Title |
H2O_24H_1 |
| Sample type |
SRA |
| |
|
| Source name |
H2O_24H_1
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype: wild type (WT)
developmental stage: boyes: 0.10
tissue: seed
treatment: no treatment
|
| Growth protocol |
Long Days, temperature 20°C , HR+70%
|
| Extracted molecule |
total RNA |
| Extraction protocol |
H2O_24H_1(100ug)
rna_selection:selection polyA, single, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Genome_build: genome of TAIR10+AIRPORT11
genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts_noStranded,counts_forwardStrand,counts_reverseStrand
|
| |
|
| Submission date |
May 26, 2020 |
| Last update date |
May 06, 2022 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
[email protected]
|
| Organization name |
INRAE - CNRS - UPSUD
|
| Lab |
IPS2
|
| Street address |
rue Noetzlin
|
| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
| |
|
| Platform ID |
GPL19580 |
| Series (1) |
| GSE151223 |
effect of ethylene rna-seq-RNA-seq ± Ethylene |
|
| Relations |
| BioSample |
SAMN15027596 |
| SRA |
SRX8401750 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4568807_STARcount_H2O_24H_1.txt.gz |
183.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
