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GEO accession:
Sample GSM46829
Query DataSets for GSM46829
Status
Public on Mar 31, 2005
Title
Pelvic Lymph Node - 1310
Sample type
RNA
Source name
Pelvic lymph node
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Pathological T: 4a
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Urinary Bladder
Histology: Urothelial (transitional cell) carcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
[email protected]
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
398.4
P
0.000754
AFFX-BioB-M_at
534.3
P
4.4e-005
AFFX-BioB-3_at
227.1
P
0.004017
AFFX-BioC-5_at
881.3
P
6e-005
AFFX-BioC-3_at
1348.5
P
4.4e-005
AFFX-BioDn-5_at
2487.5
P
4.4e-005
AFFX-BioDn-3_at
4551
P
7e-005
AFFX-CreX-5_at
10685.8
P
4.4e-005
AFFX-CreX-3_at
14534
P
4.4e-005
AFFX-DapX-5_at
181.4
P
8.1e-005
AFFX-DapX-M_at
1082.5
P
0.000662
AFFX-DapX-3_at
2408.2
P
5.2e-005
AFFX-LysX-5_at
111.2
P
0.000857
AFFX-LysX-M_at
190.1
P
0.003595
AFFX-LysX-3_at
507.4
P
7e-005
AFFX-PheX-5_at
68.8
P
0.004998
AFFX-PheX-M_at
219.6
P
0.000297
AFFX-PheX-3_at
336.9
P
0.000972
AFFX-ThrX-5_at
51.5
M
0.062929
AFFX-ThrX-M_at
253.2
P
0.000754
Total number of rows:
54675
Table truncated, full table size
1441 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46829.CEL.gz
8.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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