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GEO accession:
Sample GSM46841
Query DataSets for GSM46841
Status
Public on Mar 31, 2005
Title
Colon - 1354
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
[email protected]
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
760.5
P
0.000258
AFFX-BioB-M_at
1191.4
P
4.4e-005
AFFX-BioB-3_at
603.3
P
6e-005
AFFX-BioC-5_at
2114.5
P
4.4e-005
AFFX-BioC-3_at
2395.1
P
4.4e-005
AFFX-BioDn-5_at
5266.6
P
4.4e-005
AFFX-BioDn-3_at
8836
P
4.4e-005
AFFX-CreX-5_at
23881.9
P
4.4e-005
AFFX-CreX-3_at
28761.8
P
4.4e-005
AFFX-DapX-5_at
30.8
A
0.455409
AFFX-DapX-M_at
3.6
A
0.953518
AFFX-DapX-3_at
15.6
A
0.891021
AFFX-LysX-5_at
7.7
A
0.574044
AFFX-LysX-M_at
9
A
0.860518
AFFX-LysX-3_at
4.9
A
0.852061
AFFX-PheX-5_at
4.5
A
0.910522
AFFX-PheX-M_at
5.5
A
0.760937
AFFX-PheX-3_at
64
A
0.262827
AFFX-ThrX-5_at
9.3
A
0.804734
AFFX-ThrX-M_at
5.4
A
0.84329
Total number of rows:
54675
Table truncated, full table size
1444 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46841.CEL.gz
8.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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