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Sample GSM46849 Query DataSets for GSM46849
Status Public on Mar 31, 2005
Title Breast - 22204
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) [email protected]
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1296.9 P 0.000127
AFFX-BioB-M_at 1428.9 P 7e-005
AFFX-BioB-3_at 489.4 P 0.002556
AFFX-BioC-5_at 2868.2 P 4.4e-005
AFFX-BioC-3_at 2820.7 P 5.2e-005
AFFX-BioDn-5_at 5631.5 P 4.4e-005
AFFX-BioDn-3_at 13258.5 P 4.4e-005
AFFX-CreX-5_at 33460.1 P 4.4e-005
AFFX-CreX-3_at 40362.9 P 4.4e-005
AFFX-DapX-5_at 89.1 A 0.195266
AFFX-DapX-M_at 43.2 A 0.559354
AFFX-DapX-3_at 16.1 A 0.737173
AFFX-LysX-5_at 66.2 A 0.175328
AFFX-LysX-M_at 57.9 A 0.455413
AFFX-LysX-3_at 44.8 A 0.340661
AFFX-PheX-5_at 4.7 A 0.86866
AFFX-PheX-M_at 11.1 A 0.891041
AFFX-PheX-3_at 76.4 A 0.275146
AFFX-ThrX-5_at 16.4 A 0.645547
AFFX-ThrX-M_at 3.1 A 0.989683

Total number of rows: 54675

Table truncated, full table size 1449 Kbytes.




Supplementary file Size Download File type/resource
GSM46849.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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