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Sample GSM46856 Query DataSets for GSM46856
Status Public on Mar 31, 2005
Title Rectosigmoid - 22225
Sample type RNA
 
Source name Rectosigmoid
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.32
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 31
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) [email protected]
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 868.2 P 0.000297
AFFX-BioB-M_at 1021.6 P 5.2e-005
AFFX-BioB-3_at 650.9 P 0.000127
AFFX-BioC-5_at 1914.7 P 4.4e-005
AFFX-BioC-3_at 2382.5 P 4.4e-005
AFFX-BioDn-5_at 5081.1 P 4.4e-005
AFFX-BioDn-3_at 8915.3 P 4.4e-005
AFFX-CreX-5_at 21387 P 4.4e-005
AFFX-CreX-3_at 26747.8 P 4.4e-005
AFFX-DapX-5_at 27.4 A 0.382599
AFFX-DapX-M_at 25 A 0.631562
AFFX-DapX-3_at 4 A 0.984817
AFFX-LysX-5_at 47.1 A 0.102165
AFFX-LysX-M_at 10.3 A 0.834139
AFFX-LysX-3_at 39.9 A 0.287743
AFFX-PheX-5_at 35.2 A 0.327079
AFFX-PheX-M_at 2 A 0.99238
AFFX-PheX-3_at 60.4 A 0.300606
AFFX-ThrX-5_at 12.1 A 0.794268
AFFX-ThrX-M_at 37.6 A 0.544587

Total number of rows: 54675

Table truncated, full table size 1443 Kbytes.




Supplementary file Size Download File type/resource
GSM46856.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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