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Sample GSM46863 Query DataSets for GSM46863
Status Public on Mar 31, 2005
Title Breast - 22241
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 22
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) [email protected]
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1081.5 P 0.000446
AFFX-BioB-M_at 1719.4 P 4.4e-005
AFFX-BioB-3_at 914.5 P 4.4e-005
AFFX-BioC-5_at 2784.7 P 4.4e-005
AFFX-BioC-3_at 3893.2 P 4.4e-005
AFFX-BioDn-5_at 7408.9 P 4.4e-005
AFFX-BioDn-3_at 12982.3 P 4.4e-005
AFFX-CreX-5_at 31293.9 P 5.2e-005
AFFX-CreX-3_at 39811.5 P 4.4e-005
AFFX-DapX-5_at 811.4 P 4.4e-005
AFFX-DapX-M_at 2294.5 P 0.000446
AFFX-DapX-3_at 3419.9 P 5.2e-005
AFFX-LysX-5_at 183.7 P 0.00039
AFFX-LysX-M_at 405.2 P 0.00762
AFFX-LysX-3_at 666.3 P 0.00011
AFFX-PheX-5_at 226.4 P 0.000127
AFFX-PheX-M_at 332.1 P 0.000581
AFFX-PheX-3_at 524.9 P 0.000662
AFFX-ThrX-5_at 209.8 P 0.000127
AFFX-ThrX-M_at 426.6 P 5.2e-005

Total number of rows: 54675

Table truncated, full table size 1450 Kbytes.




Supplementary file Size Download File type/resource
GSM46863.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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