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GEO accession:
Sample GSM46930
Query DataSets for GSM46930
Status
Public on Mar 31, 2005
Title
Colon - 29287
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 1
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
[email protected]
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
539.7
P
0.001102
AFFX-BioB-M_at
512.3
P
0.00034
AFFX-BioB-3_at
324.1
P
0.042948
AFFX-BioC-5_at
1162.5
P
7e-005
AFFX-BioC-3_at
1355.2
P
5.2e-005
AFFX-BioDn-5_at
2930.5
P
4.4e-005
AFFX-BioDn-3_at
6898.7
P
6e-005
AFFX-CreX-5_at
13261.9
P
4.4e-005
AFFX-CreX-3_at
19195.4
P
4.4e-005
AFFX-DapX-5_at
132.3
P
0.021902
AFFX-DapX-M_at
586.8
P
0.00141
AFFX-DapX-3_at
1473.9
P
0.000127
AFFX-LysX-5_at
24.7
A
0.195266
AFFX-LysX-M_at
144.5
A
0.083592
AFFX-LysX-3_at
318.6
P
0.000195
AFFX-PheX-5_at
79.4
A
0.165861
AFFX-PheX-M_at
113.7
P
0.042962
AFFX-PheX-3_at
289.1
P
0.036569
AFFX-ThrX-5_at
54.9
A
0.250796
AFFX-ThrX-M_at
202.1
P
0.009337
Total number of rows:
54675
Table truncated, full table size
1446 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46930.CEL.gz
8.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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