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Sample GSM46958 Query DataSets for GSM46958
Status Public on Mar 31, 2005
Title Breast - 31881
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.03
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) [email protected]
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2333.2 P 0.000446
AFFX-BioB-M_at 3020.2 P 0.000044
AFFX-BioB-3_at 1704.6 P 0.000081
AFFX-BioC-5_at 5321.4 P 0.000044
AFFX-BioC-3_at 7316.9 P 0.000044
AFFX-BioDn-5_at 15885.8 P 0.000044
AFFX-BioDn-3_at 22384.7 P 0.000044
AFFX-CreX-5_at 61452.2 P 0.000044
AFFX-CreX-3_at 71546.3 P 0.000044
AFFX-DapX-5_at 107.5 M 0.062929
AFFX-DapX-M_at 1019.7 P 0.001796
AFFX-DapX-3_at 3438.6 P 0.00006
AFFX-LysX-5_at 127.7 A 0.0727
AFFX-LysX-M_at 314.7 A 0.083592
AFFX-LysX-3_at 960.9 P 0.000225
AFFX-PheX-5_at 67.6 A 0.48511
AFFX-PheX-M_at 90.9 A 0.354453
AFFX-PheX-3_at 530.4 P 0.00844
AFFX-ThrX-5_at 47.1 A 0.659339
AFFX-ThrX-M_at 173.5 A 0.165861

Total number of rows: 54675

Table truncated, full table size 1457 Kbytes.




Supplementary file Size Download File type/resource
GSM46958.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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