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GEO accession:
Sample GSM46964
Query DataSets for GSM46964
Status
Public on Mar 31, 2005
Title
Kidney - 4197
Sample type
RNA
Source name
Kidney
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 45
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
[email protected]
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1347
P
0.000509
AFFX-BioB-M_at
1798.2
P
4.4e-005
AFFX-BioB-3_at
1160.6
P
7e-005
AFFX-BioC-5_at
3084.3
P
4.4e-005
AFFX-BioC-3_at
3587.2
P
4.4e-005
AFFX-BioDn-5_at
8986.5
P
4.4e-005
AFFX-BioDn-3_at
15402
P
4.4e-005
AFFX-CreX-5_at
38087.4
P
4.4e-005
AFFX-CreX-3_at
44971.4
P
4.4e-005
AFFX-DapX-5_at
127.1
P
0.004998
AFFX-DapX-M_at
627.3
P
0.001593
AFFX-DapX-3_at
2713.4
P
5.2e-005
AFFX-LysX-5_at
92.5
P
0.030976
AFFX-LysX-M_at
228
P
0.015183
AFFX-LysX-3_at
595.1
P
0.000297
AFFX-PheX-5_at
73.1
P
0.006871
AFFX-PheX-M_at
137
A
0.067678
AFFX-PheX-3_at
554.7
P
0.00141
AFFX-ThrX-5_at
44.2
A
0.455409
AFFX-ThrX-M_at
148.5
P
0.004998
Total number of rows:
54675
Table truncated, full table size
1446 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46964.CEL.gz
7.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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