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GEO accession:
Sample GSM46969
Query DataSets for GSM46969
Status
Public on Mar 31, 2005
Title
Rectosigmoid - 8262
Sample type
RNA
Source name
Rectosigmoid
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.45
Patient Age: 40-50
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 300
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Diarrhea
Presenting Symptoms: Nausea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Adenocarcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
[email protected]
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
866.4
P
0.000297
AFFX-BioB-M_at
1081.2
P
0.000044
AFFX-BioB-3_at
629.9
P
0.00006
AFFX-BioC-5_at
1861.6
P
0.000052
AFFX-BioC-3_at
2258.4
P
0.000044
AFFX-BioDn-5_at
4667.9
P
0.000044
AFFX-BioDn-3_at
8663.1
P
0.000052
AFFX-CreX-5_at
23388.5
P
0.000044
AFFX-CreX-3_at
28771.2
P
0.000044
AFFX-DapX-5_at
772.1
P
0.00006
AFFX-DapX-M_at
1667.9
P
0.000662
AFFX-DapX-3_at
2597.3
P
0.000052
AFFX-LysX-5_at
174.6
P
0.000195
AFFX-LysX-M_at
271.5
P
0.003595
AFFX-LysX-3_at
445.6
P
0.000044
AFFX-PheX-5_at
200
P
0.000052
AFFX-PheX-M_at
214.4
P
0.000754
AFFX-PheX-3_at
439.4
P
0.000195
AFFX-ThrX-5_at
244.7
P
0.00011
AFFX-ThrX-M_at
376.6
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1445 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46969.CEL.gz
8.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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