|
| Status |
Public on Jul 25, 2023 |
| Title |
Mutant 1 |
| Sample type |
SRA |
| |
|
| Source name |
retina
|
| Organism |
Mus musculus |
| Characteristics |
tissue: retina
age: P2
genotype: Zeb2-Mutant
|
| Growth protocol |
Tissue taken from P2 old mice
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Rneasy mini-kit
Inhouse poly A based RNA seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
p2_mut4
|
| Data processing |
Reads were trimmed using cutadapt
After trimming the reads were mapped to the human genome using STAR v2.4.2a
Counting proceeded over genes annotated in Ensembl release 88, using htseq-count
Normalization was performed using DESeq2
Genome_build: GRCm38
Supplementary_files_format_and_content: Excel file includes the normalized counts
|
| |
|
| Submission date |
Aug 24, 2020 |
| Last update date |
Jul 25, 2023 |
| Contact name |
Ruth Ashery-Padan |
| Organization name |
Tel-Aviv University
|
| Department |
Department of Human Molecular Genetics and Biochemistry
|
| Street address |
P.O. Box 39040
|
| City |
Tel Aviv |
| ZIP/Postal code |
6997801 |
| Country |
Israel |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE156730 |
Zeb2 regulates the balance between retinal interneurons and Muller glia by inhibition of BMP-Smad signaling |
|
| Relations |
| BioSample |
SAMN15892889 |
| SRA |
SRX8998064 |
