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Sample GSM475467 Query DataSets for GSM475467
Status Public on Nov 26, 2009
Title Treated Sarcoma 2
Sample type genomic
 
Channel 1
Source name Treated Sarcoma2
Organism Homo sapiens
Characteristics sample number: 6273
gender: M
age: 18
site: humerus
pathological diagnosis: Conventional
untreated samples: n/a
treated samples: 1 - treated
tumor necrosis rate after chemotherapy: <90%
recurrence: n/a
metastasis: Yes
outcome: alive
Extracted molecule genomic DNA
Extraction protocol standard Agilent protocol
Label Cy3
Label protocol Agilent FFPE version 5.0 - ULS
 
Channel 2
Source name female DNA
Organism Homo sapiens
Characteristics source: commecial female DNA (Promega, cat# G152A)
Extracted molecule genomic DNA
Extraction protocol standard Agilent protocol
Label Cy5
Label protocol Agilent FFPE version 5.0 - ULS
 
 
Hybridization protocol Agilent FFPE version 5.0
Scan protocol CGHv4_91; grid 013282_D_20050516
Description n/a
Data processing Agilent Feature Extraction Protocol 9.1.3.1
 
Submission date Nov 25, 2009
Last update date Nov 25, 2009
Contact name wei zhang
Organization name M. D. Anderson Cancer Center
Department Pathology
Lab Genomics Core Lab
Street address 1515 Holcombe Blvd, Unit 85
City HOUSTON
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL2879
Series (1)
GSE19180 Deletion of the WWOX gene and frequent loss of its protein expression 3 in human osteosarcoma

Data table header descriptions
ID_REF
VALUE default normalized log2 Cy3/Cy5 (Agilent Feature Extraction Protocol 9.1.3.1)

Data table
ID_REF VALUE
1 0.0711399
2 1.50339
3 0.223553
4 -0.100662
5 0.162863
6 -0.011484
7 -0.302847
8 0.26445
9 -0.0946919
10 -0.117303
11 0.0294221
12 0.275594
13 -0.221093
14 0.0211065
15 -0.246632
16 0.038809
17 -0.00835562
18 -0.221485
19 -0.00399683
20 1.22407

Total number of rows: 43890

Table truncated, full table size 675 Kbytes.




Supplementary file Size Download File type/resource
GSM475467_US23502362_251328226273_S01_CGH-v4_91.txt.gz 12.7 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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