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GEO accession:
Sample GSM47874
Query DataSets for GSM47874
Status
Public on Nov 08, 2005
Title
SW480-poly-3
Sample type
RNA
Source name
polysomal RNA fractions of SW480 RNA
Organism
Homo sapiens
Extracted molecule
total RNA
Description
after ultracentrifugation on sucrose gradients of cell lysates, polysomal RNA fractions were collected and hybridized. SW480 are primary colon cancer cells isogenic with SW620 cells.
Submission date
Apr 08, 2005
Last update date
May 29, 2005
Contact name
Alessandro Provenzani
E-mail(s)
[email protected]
Phone
+390461283094
Organization name
University of Trento
Department
CIBIO
Lab
Laboratory of Genomic Screening
Street address
via delle regole 101
City
Trento
ZIP/Postal code
38100
Country
Italy
Platform ID
GPL96
Series (1)
GSE2509
Colon cancer progression-polysomal difference
Data table header descriptions
ID_REF
VALUE
probe set intensity according to GCOS software
ABS CALL
probe set is P=present or A=absent according to GCOS software
DETECTION P-VALUE
p-value associated with ABS CALL, reflects the confidence of the Detection Call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
AFFX-BioB-5_at
101.9
P
0.001102
AFFX-BioB-M_at
192.8
P
0.000044
AFFX-BioB-3_at
100.3
P
0.00007
AFFX-BioC-5_at
307.5
P
0.00006
AFFX-BioC-3_at
203.1
P
0.00006
AFFX-BioDn-5_at
219.8
P
0.000044
AFFX-BioDn-3_at
1169.3
P
0.00007
AFFX-CreX-5_at
2849.1
P
0.000044
AFFX-CreX-3_at
4203.8
P
0.000044
AFFX-DapX-5_at
7.5
M
0.054213
AFFX-DapX-M_at
6
A
0.470241
AFFX-DapX-3_at
1.7
A
0.574038
AFFX-LysX-5_at
4.9
A
0.300606
AFFX-LysX-M_at
2
A
0.724871
AFFX-LysX-3_at
3.9
A
0.470241
AFFX-PheX-5_at
0.6
A
0.910522
AFFX-PheX-M_at
0.3
A
0.995983
AFFX-PheX-3_at
12.7
A
0.227636
AFFX-ThrX-5_at
2.1
A
0.937071
AFFX-ThrX-M_at
1.9
A
0.804734
Total number of rows:
22283
Table truncated, full table size
577 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM47874.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM47874.EXP.EXP.gz
516 b
(ftp)
(http)
EXP
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