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Sample GSM47882

Query DataSets for GSM47882

Status

Public on Jul 28, 2005

Title

PA Lean F 5 subA

Sample type

RNA

Source name

Primary cultured abdominal subcutaneous preadipocytes

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Source of cells: Subcutaneous abdominal fat needle biopsies were obtained from non-diabetic Pima Indians. Preadipocytes (stromal vascular cells) were obtained from collagenase digested adipose tissue from the infranatant after fat cells (adipocytes) were allowed to float to the top. The stromal vascular cells were cultured until subconfluency and RNA extracted from the harvested cells. The array type: Affymetrix HG-U133A. Subject: Lean female (PA-LF5)
Keywords = Obesity
Keywords = inflammation
Keywords = microarray
Keywords = gene expression
Keywords = preadipocyte
Keywords = stromal-vascular cells
Keywords = adipose tissue

Submission date

Apr 08, 2005

Last update date

Jul 28, 2005

Contact name

Saraswathy Nair

E-mail(s)

[email protected]

Phone

602-200-5361

Fax

602-200-5335

Organization name

NIDDK, NIH

Department

Phoenix Epidemiology and Clinical Research Branch

Lab

Clinical Diabetes and Nutrition Section

Street address

4212 N. 16th Street

City

Phoenix

State/province

ZIP/Postal code

85016

Country

USA

Platform ID

GPL96

Series (1)

GSE2510

Expression profiling in preadipocytes in obese Pima Indians/humans

Data table header descriptions
ID_REF
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
1007_s_at	7160.6	P	0.000959
1053_at	875.1	P	0.004863
117_at	368.3	A	0.284747
121_at	7949.4	P	0.009985
1255_g_at	414.7	A	0.11716
1294_at	2171.6	P	0.031336
1316_at	1028.2	P	0.003585
1320_at	835.3	A	0.204022
1405_i_at	30.2	A	0.937979
1431_at	368.1	A	0.204022
1438_at	2258.3	A	0.07383
1487_at	1882.7	P	0.017001
1494_f_at	2076.3	P	0.017001
1598_g_at	29238	P	0.000673
160020_at	9431.9	P	0.001602
1729_at	2571.6	P	0.003067
177_at	720.6	A	0.098054
1773_at	690.9	A	0.189687
179_at	9660.7	P	0.024711
1861_at	2171.6	P	0.021866

Total number of rows: 22283

Table truncated, full table size 608 Kbytes.

Supplementary data files not provided