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Sample GSM47883

Query DataSets for GSM47883

Status

Public on Jul 28, 2005

Title

PA Lean F 6 subA

Sample type

RNA

Source name

Primary cultured abdominal subcutaneous preadipocytes

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Source of cells: Subcutaneous abdominal fat needle biopsies were obtained from non-diabetic Pima Indians. Preadipocytes (stromal vascular cells) were obtained from collagenase digested adipose tissue from the infranatant after fat cells (adipocytes) were allowed to float to the top. The stromal vascular cells were cultured until subconfluency and RNA extracted from the harvested cells. The array type: Affymetrix HG-U133A. Subject: Lean female (PA-LF6)
Keywords = Obesity
Keywords = inflammation
Keywords = microarray
Keywords = gene expression
Keywords = preadipocyte
Keywords = stromal-vascular cells
Keywords = adipose tissue

Submission date

Apr 08, 2005

Last update date

Jul 28, 2005

Contact name

Saraswathy Nair

E-mail(s)

[email protected]

Phone

602-200-5361

Fax

602-200-5335

Organization name

NIDDK, NIH

Department

Phoenix Epidemiology and Clinical Research Branch

Lab

Clinical Diabetes and Nutrition Section

Street address

4212 N. 16th Street

City

Phoenix

State/province

ZIP/Postal code

85016

Country

USA

Platform ID

GPL96

Series (1)

GSE2510

Expression profiling in preadipocytes in obese Pima Indians/humans

Data table header descriptions
ID_REF
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
1007_s_at	2732.2	P	0.003067
1053_at	807.3	P	0.003585
117_at	1470.6	P	0.00418
121_at	7405.3	P	0.014937
1255_g_at	445.6	A	0.175989
1294_at	1910.7	P	0.039365
1316_at	1201.5	P	0.007543
1320_at	828.7	A	0.189687
1405_i_at	52.8	A	0.889551
1431_at	378.8	A	0.11716
1438_at	1654.1	A	0.150527
1487_at	2395.5	P	0.024711
1494_f_at	2670.2	P	0.048995
1598_g_at	20365.5	P	0.000562
160020_at	9478.3	P	0.003067
1729_at	1899.3	P	0.003585
177_at	878.6	P	0.035163
1773_at	1044.8	A	0.189687
179_at	7091.9	M	0.05447
1861_at	1706.6	P	0.019304

Total number of rows: 22283

Table truncated, full table size 608 Kbytes.

Supplementary data files not provided