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| Status |
Public on May 01, 2021 |
| Title |
WT Petiole H48, rep3 |
| Sample type |
SRA |
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| Source name |
Excised leaf
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| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype: WT
time after excision: 48 hours
tissue: Excised leaf
age: 21-day-old plant
treatment: excision
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total mRNA was extracted from leaves using WelPrep.
Library construction and sequencing were performed using Illumina NovaSeq 6000 platform
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Raw reads were checked quality and trimmed using FastQC (Andrews, 2010)
the trimmed reads were mapped to the Arabidopsis thaliana genome (TAIR10) using STAR (Dobin et al., 2013)
After alignment, the gene-level raw count data files were generated using HTSeq (Anders et al., 2015)
Genome_build: Arabidopsis thaliana genome (TAIR10)
Supplementary_files_format_and_content: HTSeq count file (TXT)
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| Submission date |
Sep 17, 2020 |
| Last update date |
May 01, 2021 |
| Contact name |
Kitae Song |
| E-mail(s) |
[email protected]
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| Organization name |
Institute for Basic Science
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| Street address |
DGIST, 333, Techno jungang-daero,, Hyeonpung-myeon
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| City |
Daegu |
| State/province |
jung-gu |
| ZIP/Postal code |
43015 |
| Country |
South Korea |
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| Platform ID |
GPL26208 |
| Series (1) |
| GSE158133 |
Leaf excision evokes an ultradian gene expression rhythm to prime de novo root regeneration (eur1-11) |
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| Relations |
| BioSample |
SAMN16197947 |
| SRA |
SRX9141119 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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