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Sample GSM482943 Query DataSets for GSM482943
Status Public on Nov 29, 2010
Title EN04_T2DM_T52
Sample type RNA
 
Source name skeletal muscle vastus lateralis
Organism Homo sapiens
Characteristics group: T2DM T52
age: 56
bmi: 31.90
Treatment protocol After biopsy, the muscle samples were immediately frozen in liquid nitrogen.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the TRIzol reagent and purified with the Rneasy clean-up kit (Qiagen)
Label biotin
Label protocol 150ng muscle RNA was reverse transcribed into cDNA and amplified in a two-round amplification according to the manufacturer's protocol (Affymetrix)
 
Hybridization protocol A mixture of cDNA and added hybridization controls was hybridized on Affymetrix HG-U133 Plus 2.0 chips, followed by staining and washing steps in the Affymetrix GeneChip fluidics station 400.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data of muscle from control subject C7
Data processing The data were analyzed with R, a free software program for statistical computing and graphics. Normal linear regression models were used to asses significantly differentially expressed genes between patients and controls.
 
Submission date Dec 10, 2009
Last update date Sep 19, 2010
Contact name Florence van Tienen
E-mail(s) [email protected]
Organization name Maastricht University
Department Genetics and Cell biology
Street address Universiteitssingel 50
City Maastricht
ZIP/Postal code 6229ER
Country Netherlands
 
Platform ID GPL570
Series (1)
GSE19420 Skeletal muscle mitochondrial dysfunction is secondary to T2DM

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
1007_s_at 8.349615097
1053_at 5.580330849
117_at 4.915585041
121_at 7.971293449
1255_g_at 3.321928024
1294_at 6.036809444
1316_at 7.860264301
1320_at 3.321928024
1405_i_at 3.321928024
1431_at 4.221426964
1438_at 3.321928024
1487_at 9.895077705
1494_f_at 5.302268028
1552256_a_at 6.583611965
1552257_a_at 6.88879776
1552258_at 4.902988911
1552261_at 3.321928024
1552263_at 3.321928024
1552264_a_at 5.506705761
1552266_at 3.321928024

Total number of rows: 54675

Table truncated, full table size 1214 Kbytes.




Supplementary file Size Download File type/resource
GSM482943.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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