|
Status |
Public on Nov 29, 2010 |
Title |
EN04_T2DM_T52 |
Sample type |
RNA |
|
|
Source name |
skeletal muscle vastus lateralis
|
Organism |
Homo sapiens |
Characteristics |
group: T2DM T52 age: 56 bmi: 31.90
|
Treatment protocol |
After biopsy, the muscle samples were immediately frozen in liquid nitrogen.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated using the TRIzol reagent and purified with the Rneasy clean-up kit (Qiagen)
|
Label |
biotin
|
Label protocol |
150ng muscle RNA was reverse transcribed into cDNA and amplified in a two-round amplification according to the manufacturer's protocol (Affymetrix)
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|
|
Hybridization protocol |
A mixture of cDNA and added hybridization controls was hybridized on Affymetrix HG-U133 Plus 2.0 chips, followed by staining and washing steps in the Affymetrix GeneChip fluidics station 400.
|
Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
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Description |
Gene expression data of muscle from control subject C7
|
Data processing |
The data were analyzed with R, a free software program for statistical computing and graphics. Normal linear regression models were used to asses significantly differentially expressed genes between patients and controls.
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|
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Submission date |
Dec 10, 2009 |
Last update date |
Sep 19, 2010 |
Contact name |
Florence van Tienen |
E-mail(s) |
[email protected]
|
Organization name |
Maastricht University
|
Department |
Genetics and Cell biology
|
Street address |
Universiteitssingel 50
|
City |
Maastricht |
ZIP/Postal code |
6229ER |
Country |
Netherlands |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE19420 |
Skeletal muscle mitochondrial dysfunction is secondary to T2DM |
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