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Status
Public on Apr 20, 2005
Title
SALK_015750WPvsCol0WP 5h, aIW11_125.gpr
Sample type
RNA
Channel 1 Source name
SALK_015750 WP 5h
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Channel 2 Source name
Col0 WP 5h
Organism
Arabidopsis thaliana Extracted molecule
total RNA
Description
ATAF2 KO line (SALK_015750) compared to wild-type Col0 both wounded, 5h post-wounding
Submission date
Apr 18, 2005
Last update date
May 27, 2005
Contact name
Andrew Spriggs
E-mail(s)
[email protected] Phone
612-6246-5193
Organization name
CSIRO Plant Industry
Department
Bioinformatics Group
Street address
GPO Box 1600
City
Canberra
State/province
ACT
ZIP/Postal code
2601
Country
Australia
Platform ID
GPL1966 Series (1)
Data table header descriptions ID_REF
VALUE log ratio (log2 of PRE_VALUE)
CH1_FG Channel 1 median feature pixel intensity (635nm)
CH1_FG_SD Channel 1 standard deviation of the feature pixel intensity
CH1_BG Channel 1 median feature background intensity
CH1_BG_SD Channel 1 standard deviation of the feature background intensity
CH2_FG Channel 2 median feature pixel intensity (532nm)
CH2_FG_SD Channel 2 standard deviation of the feature pixel intensity
CH2_BG Channel 2 median feature background intensity
CH2_BG_SD Channel 2 standard deviation of the feature background intensity
FGPIXELS the total number of feature pixels
BGPIXELS the total number of background pixels
RATIO Unnormalized, untransformed ratio of medians (Ch1/Ch2 in unswapped sample, Ch2/Ch1 in swapped sample)
FLAG the type of flag associated with a feature. 0 denotes satisfactory features, <0 denotes un-satisfactory features that were excluded from normalisation and analysis
PRE_VALUE Normalized ratio of medians defined as CH1 divided by CH2
Data table ID_REF VALUE CH1_FG CH1_FG_SD CH1_BG CH1_BG_SD CH2_FG CH2_FG_SD CH2_BG CH2_BG_SD FGPIXELS BGPIXELS RATIO FLAG PRE_VALUE SP0000347349
-0.0735503
2250.0
491.0
31.0
15.0
2321.0
650.0
89.0
30.0
120
689
0.9694097
0
0.9502967
SP0000347350
-0.1020883
2069.0
678.0
33.0
18.0
2415.0
1028.0
90.0
32.0
120
540
0.8567288
0
0.9316834
SP0000347351
-0.0679733
892.0
211.0
31.0
16.0
921.0
273.0
87.0
31.0
120
572
0.9685125
0
0.9539772
SP0000347352
-0.1712473
1214.0
340.0
33.0
17.0
1432.0
570.0
91.0
32.0
120
503
0.8477654
0
0.8880749
SP0000347353
0.0000003
1795.0
689.0
34.0
16.0
1883.0
750.0
98.0
35.0
120
464
0.9532661
0
1
SP0000347354
0.1866563
387.0
148.0
37.0
16.0
395.0
180.0
95.0
31.0
156
480
0.9797468
0
1.1381227
SP0000347355
0.1451173
2564.0
450.0
34.0
17.0
2606.0
528.0
92.0
31.0
120
466
0.9838833
0
1.1058207
SP0000347356
-0.1831553
451.0
186.0
35.0
16.0
553.0
235.0
99.0
33.0
120
430
0.8155515
0
0.880775
SP0000347357
-0.0976383
1487.0
827.0
36.0
18.0
1720.0
1015.0
99.0
33.0
120
452
0.8645349
0
0.934562
SP0000347358
-0.0689863
20815.0
3676.0
37.0
19.0
25739.0
4296.0
92.0
33.0
120
465
0.808695
0
0.9533075
SP0000347359
0.0598413
3216.0
834.0
35.0
18.0
3418.0
783.0
101.0
33.0
120
436
0.9409011
0
1.042351
SP0000347360
0.4790943
480.0
177.0
37.0
18.0
416.0
172.0
101.0
33.0
156
432
1.1538462
0
1.3938679
SP0000347361
0.0027043
988.0
213.0
33.0
15.0
1072.0
317.0
98.0
31.0
120
465
0.9216418
0
1.0018758
SP0000347362
0.2769273
1064.0
299.0
33.0
20.0
1000.0
250.0
86.0
35.0
120
626
1.064
0
1.2116114
SP0000347363
0.3022013
731.0
148.0
34.0
16.0
726.0
143.0
95.0
33.0
120
480
1.0068871
0
1.2330243
SP0000347364
0.0751103
1973.0
612.0
33.0
16.0
2094.0
630.0
90.0
32.0
120
479
0.9422159
0
1.0534414
SP0000347365
0.3435053
1638.0
781.0
33.0
15.0
1510.0
745.0
92.0
31.0
156
510
1.0847682
0
1.2688355
SP0000347366
-0.1215283
1720.0
385.0
32.0
15.0
2259.0
647.0
95.0
32.0
120
470
0.7613988
0
0.9192136
SP0000347367
0.1335883
816.0
205.0
31.0
16.0
814.0
287.0
92.0
32.0
120
463
1.002457
0
1.0970188
SP0000347368
-0.0030413
3643.0
2080.0
33.0
15.0
4429.0
2616.0
92.0
31.0
120
471
0.8225333
0
0.9978946
13402 1276 Kbytes .Supplementary data files not provided
