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Sample GSM48525 Query DataSets for GSM48525
Status Public on Apr 21, 2005
Title R-2-C2-2
Sample type RNA
 
Channel 1
Source name cy3 Liver5
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name cy5 Pool
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).
 
Submission date Apr 19, 2005
Last update date May 27, 2005
Contact name Kenneth Lyon Phillips
E-mail(s) [email protected]
Phone 919 425 3075
Organization name Paradigm Array Labs
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL922
Series (1)
GSE2458 Cross-platform comparability of microarray data

Data table header descriptions
ID_REF
X the X-coordinate in �m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Y the Y-coordinate in �m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Dia. the diameter in �m of the feature-indicator.
F635 Median median feature pixel intensity at wavelength 1 (635 nm).
F635 Mean mean feature pixel intensity at wavelength 1 (635 nm).
F635 SD the standard deviation of the feature pixel intensity at wavelength 1 (635 nm).
B635 Median the median feature background intensity at wavelength 1 (635 nm).
B635 Mean the mean feature background intensity at wavelength 1 (635 nm).
B635 SD
% > B635+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 1 (635 nm).
% > B635+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 1 (635 nm).
F635 % Sat. the percentage of feature pixels at wavelength 1 that are saturated.
F532 Median median feature pixel intensity at wavelength 2 (532 nm).
F532 Mean mean feature pixel intensity at wavelength 2 (532 nm).
F532 SD the standard deviation of the feature intensity at wavelength 2 (532 nm).
B532 Median the median feature background intensity at wavelength 2 (532 nm).
B532 Mean the mean feature background intensity at wavelength 2 (532 nm).
B532 SD the standard deviation of the feature background intensity at wavelength 2 (532 nm).
% > B532+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 2 (532 nm).
% > B532+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 2 (532 nm).
F532 % Sat. the percentage of feature pixels at wavelength 2 that are saturated.
Ratio of Medians
Ratio of Means
Median of Ratios
Mean of Ratios
Ratios SD
Rgn Ratio
Rgn R�
F Pixels the total number of feature pixels.
B Pixels the total number of background pixels.
Sum of Medians the sum of the median intensities for each wavelength, with the median background subtracted.
Sum of Means the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
VALUE log (base 2) transform of the ratio of the medians.
F635 Median - B635 the median feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Median - B532 the median feature pixel intensity at wavelength 2 with the median background subtracted.
F635 Mean - B635 the mean feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Mean - B532 the mean feature pixel intensity at wavelength 2 with the median background subtracted.
Flags the type of flag associated with a feature.

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R� F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
22575 1090 13090 110 970 1106 577 56 63 35 100 100 0 2005 2217 628 43 49 65 100 100 0 0.466 0.483 0.468 0.437 1.421 0.599 0.890 80 600 2876 3224 -1.102 914 1962 1050 2174 0
22360 1280 13090 110 799 930 485 59 66 34 100 100 0 2020 2157 546 43 46 48 100 100 0 0.374 0.412 0.391 0.376 1.414 0.489 0.871 80 578 2717 2985 -1.418 740 1977 871 2114 0
22145 1480 13090 110 74 111 174 56 63 31 36 21 0 99 134 159 43 44 10 98 96 0 0.321 0.604 0.641 0.553 3.341 1.067 0.749 80 562 74 146 -1.637 18 56 55 91 0
21930 1650 13090 110 430 517 301 55 62 31 100 100 0 507 635 400 43 45 12 100 100 0 0.808 0.780 0.774 0.760 1.433 0.782 0.904 80 552 839 1054 -0.307 375 464 462 592 0
21715 1850 13090 110 171 181 83 60 65 31 90 71 0 210 221 53 43 45 13 100 100 0 0.665 0.680 0.581 0.589 2.113 0.793 0.562 80 576 278 299 -0.589 111 167 121 178 0
21500 2030 13090 110 148 189 310 60 63 31 73 60 0 220 242 117 42 43 9 100 100 0 0.494 0.645 0.500 0.447 2.982 2.201 0.135 80 550 266 329 -1.016 88 178 129 200 0
21285 2220 13090 130 134 149 83 58 62 31 75 56 0 177 197 89 43 44 9 98 98 0 0.567 0.591 0.580 0.509 2.491 0.694 0.456 120 746 210 245 -0.818 76 134 91 154 0
21070 2410 13090 110 151 166 115 57 65 39 90 60 0 182 200 104 43 44 11 100 100 0 0.676 0.694 0.649 0.656 1.770 0.893 0.625 80 518 233 266 -0.564 94 139 109 157 0
20855 2590 13090 120 886 989 445 55 62 33 100 99 0 1570 1819 956 42 43 9 100 99 0 0.544 0.526 0.549 0.542 1.382 0.495 0.911 120 622 2359 2711 -0.879 831 1528 934 1777 0
20640 2770 13090 110 224 302 322 57 66 41 87 71 0 315 577 882 42 46 27 100 100 0 0.612 0.458 0.464 0.469 1.986 0.415 0.836 80 546 440 780 -0.709 167 273 245 535 0
20425 2970 13090 110 114 126 72 58 65 40 60 27 0 122 133 45 43 46 26 100 91 0 0.709 0.756 0.758 0.644 2.766 1.615 0.347 80 585 135 158 -0.496 56 79 68 90 0
20210 3170 13090 120 141 170 129 56 62 32 80 60 0 314 364 221 43 44 13 98 97 0 0.314 0.355 0.346 0.308 2.490 0.370 0.490 120 626 356 435 -1.673 85 271 114 321 0
19995 3350 13090 120 189 203 94 55 81 262 13 0 0 270 279 108 44 54 122 88 42 0 0.593 0.630 0.639 0.620 2.475 0.676 0.654 120 593 360 383 -0.754 134 226 148 235 0
19780 3540 13090 120 420 447 199 55 62 31 99 98 0 804 856 333 43 43 9 100 99 0 0.480 0.482 0.485 0.471 1.534 0.472 0.822 120 626 1126 1205 -1.060 365 761 392 813 0
19565 3730 13090 130 96 108 86 57 63 32 55 30 0 98 107 69 43 44 9 95 92 0 0.709 0.797 0.929 0.820 2.702 1.370 0.434 120 678 94 115 -0.496 39 55 51 64 0
19350 3920 13090 120 188 190 83 57 62 31 90 78 0 253 245 74 43 44 9 97 97 0 0.624 0.658 0.676 0.622 2.072 0.729 0.640 120 592 341 335 -0.681 131 210 133 202 0
19135 4100 13090 120 157 163 78 56 62 31 85 70 0 218 233 73 43 44 9 100 99 0 0.577 0.563 0.548 0.500 2.332 0.613 0.457 120 593 276 297 -0.793 101 175 107 190 0
18920 4290 13090 120 126 137 64 58 65 31 73 53 0 186 220 169 43 44 9 99 99 0 0.476 0.446 0.430 0.410 2.163 0.338 0.456 120 609 211 256 -1.072 68 143 79 177 0
18705 4480 13090 120 178 209 111 58 63 31 91 81 0 299 373 285 44 45 9 98 98 0 0.471 0.459 0.450 0.463 2.154 0.369 0.587 120 626 375 480 -1.087 120 255 151 329 0
18490 4670 13090 120 148 157 83 58 63 30 79 65 0 231 245 111 44 44 9 98 96 0 0.481 0.493 0.526 0.421 2.926 0.518 0.536 120 626 277 300 -1.055 90 187 99 201 0

Total number of rows: 22575

Table truncated, full table size 3579 Kbytes.




Supplementary data files not provided
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