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Sample GSM49598 Query DataSets for GSM49598
Status Public on Jun 01, 2005
Title MPM tumor 37
Sample type RNA
 
Source name MPM tumor specimen 37
Organism Homo sapiens
Extracted molecule total RNA
 
Description Discarded MPM surgical specimens (n=40), normal pleura specimens (n=5), and normal lung specimens (n=4) were freshly collected (and snap frozen) from patients who underwent surgery at Boston’s Brigham and Women’s Hospital (BWH) between October 1998 and August 2000. All of these patients underwent extrapleural pneumonectomy with heated intra-pleural cisplatin chemotherapy delivered after the specimens were removed. All normal specimens were obtained from patients who were never diagnosed with MPM. Two human MPM cell lines (MS589 and MS428) were kindly provided by Jonathan A. Fletcher, M.D., Department of Pathology, BWH. The JMN1B MPM cell line19,20 has been described previously. The SV40-immortalized, non-tumorigenic mesothelial cell line (Met-5A)21 and the MPM cell line MSTO-211H22 were purchased from the American Type Culture Collection. Normal tissues were obtained from additional consented patients undergoing treatment for diseases other than MPM. All MPM samples used in these studies contained relatively pure tumor (greater than 50% tumor cells per high power field examined in a section adjacent to the tissue used). The microscopic slides from the patients’ resection specimens were reviewed by one of the authors (J.G.), and the diagnosis and histologic subclassification of MPM confirmed in all cases. Linked clinical and pathological data were obtained for all patients who contributed tumor specimens. Specimens and data were rendered anonymous to protect patient confidentiality. Studies utilizing human tissues were approved by and conducted in accordance with the policies of the Institutional Review Board at BWH.
 
Submission date Apr 26, 2005
Last update date Oct 28, 2005
Contact name Gavin Gordon
E-mail(s) [email protected]
Phone 617-732-6526
Organization name Brigham and Women's Hospital/Harvard Medical School
Street address
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL96
Series (1)
GSE2549 Malignant pleural mesothelioma

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 232.6 P 0.001102
AFFX-BioB-M_at 407.9 P 0.000095
AFFX-BioB-3_at 164.3 P 0.000044
AFFX-BioC-5_at 823.8 P 0.000095
AFFX-BioC-3_at 618.3 P 0.00007
AFFX-BioDn-5_at 724 P 0.000044
AFFX-BioDn-3_at 3105.3 P 0.000052
AFFX-CreX-5_at 6269.5 P 0.000044
AFFX-CreX-3_at 9671.7 P 0.000044
AFFX-DapX-5_at 3.9 A 0.425962
AFFX-DapX-M_at 16.3 A 0.425962
AFFX-DapX-3_at 2.6 A 0.883887
AFFX-LysX-5_at 1.8 A 0.737173
AFFX-LysX-M_at 6.4 A 0.686277
AFFX-LysX-3_at 20.7 A 0.165861
AFFX-PheX-5_at 2.9 A 0.868639
AFFX-PheX-M_at 5.1 A 0.772364
AFFX-PheX-3_at 20.1 A 0.455413
AFFX-ThrX-5_at 2.6 A 0.843268
AFFX-ThrX-M_at 12.8 A 0.672921

Total number of rows: 22283

Table truncated, full table size 580 Kbytes.




Supplementary data files not provided

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