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Status
Public on Aug 07, 2006
Title
15_RAF_SUC
Sample type
RNA
Channel 1 Source name
L. acidophilus, raffinose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Channel 2 Source name
L. acidophilus, sucrose
Organism
Lactobacillus acidophilus Extracted molecule
total RNA
Description
L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005).
Submission date
Apr 26, 2005
Last update date
Aug 07, 2006
Contact name
Todd Robert Klaenhammer
E-mail(s)
[email protected] , [email protected] , [email protected] Phone
919-515-2972
Fax
919 513 0014
Organization name
North Carolina State University
Department
Department of Food, Bioprocessing, and Nutrition Sciences
Street address
City
Raleigh
State/province
NC
ZIP/Postal code
27695
Country
USA
Platform ID
GPL1401 Series (1)
GSE2577 Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays
Data table header descriptions ID_REF identifier reference column
RATIO (Cy5 Normalized - Background) / (Cy3 Normalized -Background)
VALUE log ratio (log2 of RATIO)
CH1_RAW raw signal output for channel 1
CH1_BKD background signal output for channel 1
CH1_SD standard deviation calculated for the mean signal for channel 1
CH1_BKD_SD standard deviation for the mean background signal for channel 1
CH2_RAW raw signal output for channel 2
CH2_BKD background signal output for channel 2
CH2_SD standard deviation calculated for the mean signal for channel 2
CH2_BKD_SD standard deviation for the mean background signal for channel 2
Data table ID_REF RATIO VALUE CH1_RAW CH1_BKD CH1_SD CH1_BKD_SD CH2_RAW CH2_BKD CH2_SD CH2_BKD_SD 1
1.741638577
0.800445268
8233.732422
1034.854126
6278.999512
757.243958
5896.661133
164.0625
6770.711426
274.196899
2
1.801109531
0.848885918
4932.545898
912.979187
4630.996582
835.037048
3620.673584
310.520844
4973.079102
415.763123
3
2.507053387
1.325992718
5697.472168
763.625
5133.59082
638.331848
5980.965332
325.375
6329.019531
425.337494
4
2.037971249
1.027133698
4761.022461
540.9375
4772.819336
654.16925
4178.124023
245.8125
4789.137695
384.890137
5
1.760448778
0.815943251
6066.814941
1140.75
4437.099609
835.987
4143.478027
178.395828
4495.147949
223.947342
6
1.732529318
0.792879766
6147.756836
962.5
5357.992676
859.283264
4377.706055
270.1875
4863.302734
416.518738
7
1.724604321
0.7862654
11284.38086
1042.791626
9605.49707
1237.169312
8367.111328
291.3125
8217.820313
375.345856
8
1.348147068
0.430977887
11415.59277
968.291687
8572.735352
750.133179
6734.369629
294.604156
6261.827637
438.695099
9
1.2586627
0.331891717
8303.296875
655.104187
6742.911133
631.619934
4616.210938
214.75
4638.020996
414.623047
10
1.45797382
0.543964814
5629.700684
827.125
5136.094238
723.925598
3388.555908
187.0625
3957.102051
317.035431
11
1.319453778
0.399940812
5552.588379
898.479187
5361.783203
956.369019
3011.631348
203.875
3811.399414
397.609283
12
1.641847843
0.715320433
5400
764.625
5392.539063
747.863464
3678.133057
198.395828
4617.861816
317.523376
13
1.576872166
0.657065708
16600.87695
1415.041626
13203.69141
1597.746338
11648.10742
699.375
9828.467773
1136.827759
14
1.409891902
0.495584553
15456.99316
789.958313
12165.16406
783.365906
9656.855469
201.958328
9175.620117
365.724701
15
1.290980386
0.368467082
12033.83691
783.875
9465.948242
738.584656
6842.70752
202.229172
6273.972168
290.040802
16
2.168565208
1.116740825
10435.41113
445.979156
11279.42481
527.611633
10031.31836
126.604164
11546.02637
250.80838
17
1.891054471
0.91919092
12085.4834
818.875
13129.97949
940.482117
10102.39746
360.895844
12225.23535
580.434387
18
2.359590215
1.238536332
9773.147461
585.020813
10974.88574
701.252075
10091.14356
178.4375
12496.22754
272.624817
19
1.964673734
0.974289749
35935.91406
1892.708374
19769.78516
2189.001221
31562.99609
982.145813
20750.92969
1785.14502
20
2.149437541
1.103959189
34978.67188
846.604187
21542.40234
832.593811
33801.24219
257.145844
21556.99023
392.613678
5736 659 Kbytes .Supplementary data files not provided
