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GEO accession:
Sample GSM50020
Query DataSets for GSM50020
Status
Public on Jul 28, 2005
Title
MDA-MB-231 #2293
Sample type
RNA
Source name
Breast cancer cell line
Organism
Homo sapiens
Characteristics
tissue type: Breast cancer cell line
Extracted molecule
total RNA
Extraction protocol
RNA was extracted using a Qiagen RNeasy kit from homogenized frozen tumors
Label
biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
RNA was extracted using a Quiagen RNeasy kit from subconfluent cells grown on plastic.
Data processing
MAS 5.0
Submission date
May 03, 2005
Last update date
Nov 30, 2010
Contact name
Agnes Viale
E-mail(s)
[email protected]
Phone
212 639 3031
Fax
212 717 3053
Organization name
Memorial Sloan Kettering Cancer Center
Department
Molecular Biology
Lab
Genomics Core Laboratory
Street address
1275 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL96
Series (1)
GSE2603
Subpopulations of MDA-MB-231 and Primary Breast Cancers
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
294.6
P
AFFX-BioB-M_at
249.6
P
AFFX-BioB-3_at
210.7
P
AFFX-BioC-5_at
715.5
P
AFFX-BioC-3_at
494.2
P
AFFX-BioDn-5_at
381
P
AFFX-BioDn-3_at
3837.8
P
AFFX-CreX-5_at
5449.8
P
AFFX-CreX-3_at
11267.2
P
AFFX-DapX-5_at
25.5
A
AFFX-DapX-M_at
102.5
P
AFFX-DapX-3_at
15.6
A
AFFX-LysX-5_at
32.7
A
AFFX-LysX-M_at
16
A
AFFX-LysX-3_at
41.7
A
AFFX-PheX-5_at
8.1
A
AFFX-PheX-M_at
25.4
A
AFFX-PheX-3_at
63.9
A
AFFX-ThrX-5_at
10.7
A
AFFX-ThrX-M_at
36.9
A
Total number of rows:
22283
Table truncated, full table size
402 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM50020.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM50020.EXP.gz
354 b
(ftp)
(http)
EXP
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