GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM50025
Query DataSets for GSM50025
Status
Public on Jul 28, 2005
Title
MDA-MB-231 SCP#43
Sample type
RNA
Source name
Breast cancer cell line
Organism
Homo sapiens
Characteristics
tissue type: Breast cancer cell line
Extracted molecule
total RNA
Extraction protocol
RNA was extracted using a Qiagen RNeasy kit from homogenized frozen tumors
Label
biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
RNA was extracted using a Quiagen RNeasy kit from subconfluent cells grown on plastic.
Data processing
MAS 5.0
Submission date
May 03, 2005
Last update date
Nov 30, 2010
Contact name
Agnes Viale
E-mail(s)
[email protected]
Phone
212 639 3031
Fax
212 717 3053
Organization name
Memorial Sloan Kettering Cancer Center
Department
Molecular Biology
Lab
Genomics Core Laboratory
Street address
1275 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL96
Series (1)
GSE2603
Subpopulations of MDA-MB-231 and Primary Breast Cancers
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
828.3
P
AFFX-BioB-M_at
1661
P
AFFX-BioB-3_at
855.3
P
AFFX-BioC-5_at
1713.8
P
AFFX-BioC-3_at
1514.3
P
AFFX-BioDn-5_at
2218.1
P
AFFX-BioDn-3_at
10360.5
P
AFFX-CreX-5_at
20062.1
P
AFFX-CreX-3_at
26943.5
P
AFFX-DapX-5_at
19.1
A
AFFX-DapX-M_at
39.9
A
AFFX-DapX-3_at
4.5
A
AFFX-LysX-5_at
10
A
AFFX-LysX-M_at
29.6
A
AFFX-LysX-3_at
8.4
A
AFFX-PheX-5_at
5.2
A
AFFX-PheX-M_at
2.6
A
AFFX-PheX-3_at
79.4
A
AFFX-ThrX-5_at
11
A
AFFX-ThrX-M_at
6.7
A
Total number of rows:
22283
Table truncated, full table size
399 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM50025.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM50025.EXP.gz
488 b
(ftp)
(http)
EXP
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
