|
| Status |
Public on Mar 01, 2010 |
| Title |
Whole Blood DDN62 |
| Sample type |
genomic |
| |
|
| Source name |
genomic DNA from whole blood DDN62
|
| Organism |
Homo sapiens |
| Characteristics |
source: bi-sulphite converted genomic whole blood DNA from Case
case/control: Case
ageatdiagnosis: 15
durationt1d: 35
sex: F
cohort: Dublin
sentrix_id: 4632443044
sentrix_position: A
bs conversion c1: Grn 2967
bs conversion c2: Grn 2746
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from whole blood of T1D patients using a salting out method
|
| Label |
Biotin
|
| Label protocol |
Standard Illumina Protocol for Infinium 27k Chip
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
whole blood from cases and controls, matched for age and sex, were drawn from two irish cohorts. Three replicates labeled with an r are included.
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Jan 27, 2010 |
| Last update date |
Mar 01, 2010 |
| Contact name |
Andrew E Teschendorff |
| E-mail(s) |
[email protected]
|
| Phone |
+44 02076790727
|
| Organization name |
University College London
|
| Department |
UCL Cancer Institute/Institute for Women's Health
|
| Street address |
72 Huntley Street
|
| City |
London |
| ZIP/Postal code |
WC1E 6BT |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE20067 |
Genome wide DNA methylation profiling of diabetic nephropathy in type 1 diabetes mellitus |
|
