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Sample GSM502410 Query DataSets for GSM502410
Status Public on Jan 19, 2012
Title Sample11_phenotype0_race3
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: African-American
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.836717617 134.299 4.544177 0 40
ILMN_1660305 4.931952166 160.0557 4.53344 0 32
ILMN_1792173 5.124104543 196.5532 8.146728 0 44
ILMN_1762337 4.233693475 81.26282 2.964361 0.5810617 43
ILMN_1736007 4.34257479 88.86172 2.721375 0.3371592 48
ILMN_1787689 4.271176662 77.47468 3.227252 0.7560976 36
ILMN_1731507 4.086255655 69.068 2.309763 0.9497848 36
ILMN_1814316 4.333547628 89.05419 3.89163 0.3314204 35
ILMN_1745607 4.228255321 75.63961 2.28964 0.8091822 53
ILMN_1757454 4.284095671 78.83824 2.254314 0.6987088 50
ILMN_1735045 4.470682149 91.95219 3.214938 0.2395983 41
ILMN_1680754 4.2780704 75.01397 1.884969 0.8220947 49
ILMN_1659452 4.349618254 88.48795 3.276507 0.3472023 37
ILMN_1767388 4.549067201 106.2223 4.316754 0.02439024 39
ILMN_1673870 4.277343287 83.16963 2.408513 0.5136299 35
ILMN_1675204 4.383499398 88.08183 2.831157 0.3572453 33
ILMN_1755321 4.648769462 116.5832 3.764785 0 55
ILMN_1698554 4.704883448 122.1582 4.469708 0 43
ILMN_1805938 4.185945227 71.8882 2.11104 0.9110473 34
ILMN_1676336 4.969752728 155.0364 4.723869 0 43

Total number of rows: 22184

Table truncated, full table size 1131 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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