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Sample GSM502429 Query DataSets for GSM502429
Status Public on Jan 19, 2012
Title Sample30_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.866477671 103.6223 3.278479 0 41
ILMN_1660305 4.900563433 96.89604 4.194783 0 34
ILMN_1792173 5.067609136 120.0682 5.203105 0 32
ILMN_1762337 4.198744072 56.06931 3.397153 0.8726484 38
ILMN_1736007 4.33385524 64.77422 2.484097 0.3603473 43
ILMN_1787689 4.348943341 64.93822 3.021349 0.3502171 40
ILMN_1731507 4.170272529 57.58034 4.748826 0.8118669 18
ILMN_1814316 4.330738143 65.44949 2.986234 0.3198263 36
ILMN_1745607 4.268198873 59.74195 2.420908 0.6729378 42
ILMN_1757454 4.381369989 67.01661 3.061922 0.2286541 48
ILMN_1735045 4.359780407 67.65323 3.236051 0.2098408 30
ILMN_1680754 4.35114075 66.30561 2.649794 0.2648336 56
ILMN_1659452 4.311902863 64.58359 2.265072 0.3646888 50
ILMN_1767388 4.458345275 67.67166 2.725569 0.2098408 52
ILMN_1673870 4.342493825 65.98857 2.816891 0.2836469 43
ILMN_1675204 4.320368858 66.20686 2.621246 0.2691751 41
ILMN_1755321 4.606994765 80.55675 2.947707 0.005788712 59
ILMN_1698554 4.711329323 88.59087 3.785402 0 43
ILMN_1805938 4.194228242 56.50013 2.429291 0.8552822 34
ILMN_1676336 4.823943395 91.07229 4.081984 0 32

Total number of rows: 22184

Table truncated, full table size 1130 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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