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Sample GSM502480 Query DataSets for GSM502480
Status Public on Jan 19, 2012
Title Sample81_phenotype0_race3
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: African-American
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.771859766 110.3203 4.064752 0 40
ILMN_1660305 5.198050604 199.8853 8.712546 0 27
ILMN_1792173 5.221912607 196.6817 7.696395 0 38
ILMN_1762337 4.102046264 56.01686 2.167318 0.9799139 37
ILMN_1736007 4.288420775 68.92084 2.64439 0.4648494 31
ILMN_1787689 4.299292869 73.28912 2.11882 0.251076 51
ILMN_1731507 4.14322414 59.29329 2.449025 0.9153515 39
ILMN_1814316 4.311182175 70.13308 2.280291 0.4088953 58
ILMN_1745607 4.366392975 76.13529 1.852225 0.1549498 44
ILMN_1757454 4.250005346 65.22669 2.378532 0.6929699 40
ILMN_1735045 4.505552235 82.92118 2.356819 0.0286944 46
ILMN_1680754 4.310719949 71.88192 2.889834 0.3156385 39
ILMN_1659452 4.256584759 66.26579 2.2785 0.6312769 36
ILMN_1767388 4.47924712 93.46561 3.819962 0 34
ILMN_1673870 4.296177788 67.08371 3.005684 0.5753228 36
ILMN_1675204 4.300368273 69.93039 2.357397 0.4246772 43
ILMN_1755321 4.591262566 91.38403 4.116805 0 41
ILMN_1698554 4.709630715 110.2232 3.19407 0 45
ILMN_1805938 4.317655986 70.67198 3.49564 0.3787661 40
ILMN_1676336 5.047057746 170.5814 5.328804 0 32

Total number of rows: 22184

Table truncated, full table size 1123 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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