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Sample GSM502516 Query DataSets for GSM502516
Status Public on Jan 19, 2012
Title Sample117_phenotype0_race3
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: African-American
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.702660419 97.16039 3.711284 0 34
ILMN_1660305 5.032926412 150.9138 4.679758 0 42
ILMN_1792173 5.27073658 170.9026 8.048923 0 37
ILMN_1762337 4.176298649 63.99015 3.329307 0.8402283 52
ILMN_1736007 4.462172592 82.39045 3.475387 0.1226819 44
ILMN_1787689 4.326570114 75.74601 2.588664 0.3338088 51
ILMN_1731507 4.157049016 59.6854 2.299434 0.9429387 37
ILMN_1814316 4.368040404 78.41032 3.227526 0.2410842 45
ILMN_1745607 4.28826429 76.65048 2.594561 0.3081312 51
ILMN_1757454 4.34589672 77.00475 3.232172 0.296719 33
ILMN_1735045 4.537630276 92.9487 3.485066 0.007132668 49
ILMN_1680754 4.291818178 77.74018 3.200613 0.2653352 36
ILMN_1659452 4.27088125 70.43884 3.904373 0.5834522 26
ILMN_1767388 4.560439203 99.35385 3.835448 0 47
ILMN_1673870 4.260945869 68.82449 3.776355 0.6619115 36
ILMN_1675204 4.336755052 76.66496 4.492872 0.3081312 30
ILMN_1755321 4.607074825 100.2479 3.545747 0 35
ILMN_1698554 4.780357043 115.6479 8.651604 0 27
ILMN_1805938 4.212919854 70.37368 2.742322 0.5891584 37
ILMN_1676336 5.105112951 162.4506 5.491768 0 40

Total number of rows: 22184

Table truncated, full table size 1131 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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