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Sample GSM502518 Query DataSets for GSM502518
Status Public on Jan 19, 2012
Title Sample119_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.701816201 87.0582 3.116946 0.02142857 35
ILMN_1660305 4.711196471 98.09843 3.585722 0 32
ILMN_1792173 4.993766112 124.3412 4.73297 0 33
ILMN_1762337 4.203058829 62.3976 2.318136 0.8157143 46
ILMN_1736007 4.3168038 70.72358 2.701166 0.4314286 43
ILMN_1787689 4.463272914 78.22973 2.88399 0.1457143 37
ILMN_1731507 4.214405606 59.68791 3.633608 0.8914286 29
ILMN_1814316 4.263626599 68.25753 2.545856 0.56 54
ILMN_1745607 4.283627249 72.87959 3.307724 0.32 36
ILMN_1757454 4.416589073 76.35284 3.173957 0.2 38
ILMN_1735045 4.406536722 78.74452 2.777381 0.1414286 53
ILMN_1680754 4.401914968 79.43225 3.404495 0.12 37
ILMN_1659452 4.256471477 66.75851 3.373046 0.6257143 30
ILMN_1767388 4.479804425 86.28071 3.351369 0.02857143 47
ILMN_1673870 4.32364609 68.28568 3.275458 0.56 28
ILMN_1675204 4.207490159 65.63379 3.95553 0.6814286 33
ILMN_1755321 4.764959864 99.6944 3.868835 0 33
ILMN_1698554 4.653210289 97.48355 4.512395 0 30
ILMN_1805938 4.208381741 67.14508 2.646028 0.6042857 44
ILMN_1676336 4.799717692 102.1509 3.878268 0 40

Total number of rows: 22184

Table truncated, full table size 1129 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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